Related Experiment Video
Updated: Jan 14, 2026

Self-assembling Morphologies Obtained from Helical Polycarbodiimide Copolymers and Their Triazole Derivatives
Published on: February 7, 2017
Isomer geometry controls local mobility in azopolymers: coarse-grained simulation insights
1Institute of Materials Science and Technology (INTEMA), University of Mar del Plata and National Research Council (CONICET), Colón 10850, 7600 Mar del Plata, Argentina. cbalbuena@fi.mdp.edu.ar.
Abstract:
We use coarse-grained molecular dynamics to isolate how azobenzene isomer identity (cis vs. trans) modulates polymer dynamics in a guest-host setting without covalent attachment and without explicit photoisomerization. Segmental relaxation is quantified from the incoherent intermediate scattering function Fs(k,t), with relaxation times τ(T) extracted from the Fs(k,τ) = e-1 criterion, fitted by Vogel-Fulcher-Tammann, and a glass-transition temperature Tg defined by a standard operational threshold. Across compositions, global structure (density and pair correlations) is nearly isomer-invariant. In contrast, within our model, cis systems exhibit systematically shorter τ and lower Tg than trans-differences consistent with a localized dynamic facilitation near chromophores. Voronoi analysis shows that the average monomer free volume around azobenzene is essentially insensitive to isomer identity, whereas cis chromophores occupy larger Voronoi cells at low T. Isoconfigurational ensembles (propensity analysis) reveal that monomers in the first-neighbor shell of cis are more mobile than near trans, and that immobilizing the chromophores suppresses this contrast. Overall, in this fixed-isomer equilibrium setting, our results cannot support a purely homogeneous free-volume softening between isomers (and, by construction, do not test illumination-induced macroscopic stress gradients); instead they point to a local, cooperative, mobility-dependent pathway that provides a geometry-only baseline for the still-debated microscopic origin of light-driven mass transport in azobenzene materials.
Related Concept Videos
Disubstituted Cyclohexanes: cis-trans Isomerism
In cyclohexane, the substituents can occupy different positions generating distinct isomers....
Isomerism in Alkenes
An isomer is called cis-2-butene when the methyl groups are on the same side of the double bond, and the other stereoisomer, in which methyl groups are on the opposite side of the double bond, is called trans-2-butene. The cis and trans stereoisomers are not...
Polymer Classification: Stereospecificity
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal...
Stereoisomerism
Isomers are different chemical species that have the same chemical formula.
Transition metal complexes often exist as geometric isomers, in which the same atoms are connected through the same types of bonds but with differences in their orientation in space. Coordination complexes with two different ligands in the cis and trans positions from a ligand of interest form isomers. For example, the octahedral [Co(NH3)4Cl2]+ ion has two isomers (Figure 1) In the cis...
Stereoisomerism of Cyclic Compounds

