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Generation and Assembly of Virus-Specific Nucleocapsids of the Respiratory Syncytial Virus
Published on: July 27, 2021
Structure and function of the nairovirus cap-snatching endonuclease
Wenhua Kuang1, Zhenhua Tian1,2, Gan Zhang3
1State Key Laboratory of Virology and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430207, Hubei, China.
Abstract:
Nairoviruses include several human pathogens such as Crimean-Congo hemorrhagic fever virus (CCHFV) and Kasokero virus (KASV). The cap-snatching endonuclease (EN) domain of the viral polymerase is essential for transcription and represents a promising antiviral target. However, the structural and functional mechanisms of nairovirus ENs remain poorly understood. Here, we describe biochemical and structural studies of the ENs from CCHFV and KASV. Biochemical assays demonstrate that the RNA endonuclease activity of both ENs is activated by manganese ions and exhibits a preference for uridine-rich RNA substrates. This activity is inhibited by three metal-chelating inhibitors (DPBA, L-742,001, and BXA), with BXA displaying the highest binding affinity and inhibitory potency. We further determine nine crystal structures of CCHFV and KASV ENs in apo, metal ion-bound, and inhibitor-bound states. Comparative structural analysis uncovers a two-metal-ion binding mode unique to nairovirus ENs, in which conserved residues coordinate two manganese ions via bridging water molecules. In the inhibitor-bound structures of KASV EN, BXA forms additional stabilizing interactions with the enzyme, explaining its superior inhibitory effect. Functional assays further confirm that the two-metal-ion mechanism is critical for viral transcription. These findings provide a structural foundation for the rational design of antivirals against CCHFV and related pathogens.
Insights
Structural and biochemical studies reveal a unique two-metal-ion mechanism in nairovirus endonuclease (EN) activity, crucial for viral transcription. These findings pave the way for developing novel antivirals targeting Crimean-Congo hemorrhagic fever virus (CCHFV).
Area of Science:
- Virology
- Structural Biology
- Biochemistry
Background:
- Nairoviruses, including CCHFV and KASV, are significant human pathogens.
- The viral endonuclease (EN) domain is vital for transcription and a key antiviral target.
- Structural and functional insights into nairovirus ENs are limited.
Purpose of the Study:
- To elucidate the biochemical and structural mechanisms of CCHFV and KASV ENs.
- To identify potential antiviral strategies targeting nairovirus replication.
Main Methods:
- Biochemical assays to characterize RNA endonuclease activity.
- Determination of crystal structures of CCHFV and KASV ENs in various states.
- Functional assays to assess the role of the metal-ion binding mechanism.
Main Results:
- Nairovirus EN activity is manganese-dependent and prefers uridine-rich RNA.
- Three inhibitors (DPBA, L-742,001, BXA) were identified, with BXA showing highest potency.
- Nine crystal structures revealed a unique two-metal-ion binding mode essential for transcription.
Conclusions:
- The two-metal-ion binding mechanism is critical for nairovirus transcription.
- Structural data provides a foundation for designing targeted antivirals against CCHFV and related viruses.
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