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Viral Structure00:56

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Viruses are extraordinarily diverse in shape and size, but they all have several structural features in common. All viruses have a core that contains a DNA- or RNA-based genome. The core is surrounded by a protective coat of proteins called the capsid. The capsid is composed of subunits called capsomeres. The capsid and genome-containing core are together known as the nucleocapsid.
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Viruses are unique biological entities that blur the boundary between living and non-living systems. Although they lack cellular structure and metabolic processes, they can exhibit characteristics of life when infecting a host. Their defining feature is a nucleic acid core, composed of either DNA or RNA, encapsulated within a protein coat called a capsid. This simple structure allows them to invade host cells and use their machinery for replication efficiently.Viral Structure and...
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Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
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During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
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RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
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Structure and function of the nairovirus cap-snatching endonuclease.

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Structural and biochemical studies reveal a unique two-metal-ion mechanism in nairovirus endonuclease (EN) activity, crucial for viral transcription. These findings pave the way for developing novel antivirals targeting Crimean-Congo hemorrhagic fever virus (CCHFV).

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Area of Science:

  • Virology
  • Structural Biology
  • Biochemistry

Background:

  • Nairoviruses, including CCHFV and KASV, are significant human pathogens.
  • The viral endonuclease (EN) domain is vital for transcription and a key antiviral target.
  • Structural and functional insights into nairovirus ENs are limited.

Purpose of the Study:

  • To elucidate the biochemical and structural mechanisms of CCHFV and KASV ENs.
  • To identify potential antiviral strategies targeting nairovirus replication.

Main Methods:

  • Biochemical assays to characterize RNA endonuclease activity.
  • Determination of crystal structures of CCHFV and KASV ENs in various states.
  • Functional assays to assess the role of the metal-ion binding mechanism.

Main Results:

  • Nairovirus EN activity is manganese-dependent and prefers uridine-rich RNA.
  • Three inhibitors (DPBA, L-742,001, BXA) were identified, with BXA showing highest potency.
  • Nine crystal structures revealed a unique two-metal-ion binding mode essential for transcription.

Conclusions:

  • The two-metal-ion binding mechanism is critical for nairovirus transcription.
  • Structural data provides a foundation for designing targeted antivirals against CCHFV and related viruses.