PolyA tail segmentation improves the stability of the template DNA and increases the translatability of in vitro

Tomasz Spiewla1,2, Karol Czubak3, Zofia Pilch4

  • 1Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, Warsaw 02-093, Poland.

Nucleic Acids Research
|January 15, 2026
PubMed

Insights

Segmented polyA tails improve messenger RNA (mRNA) stability and translation. Novel segmented polyA patterns enhance protein production, offering new possibilities for mRNA therapeutics.

Area of Science:

  • Molecular Biology
  • Biotechnology
  • Biochemistry

Background:

  • The polyadenylate (polyA) tail is crucial for messenger RNA (mRNA) regulation, influencing stability, localization, and translation.
  • Long polyA tails can be unstable during DNA amplification, hindering in vitro mRNA production.
  • Segmented polyA tails with heteronucleotide spacers offer a potential solution to improve mRNA production and function.

Purpose of the Study:

  • To develop and evaluate novel segmented polyA tail designs for enhanced mRNA stability and translation.
  • To investigate the impact of polyA tail length, spacer frequency, and placement on mRNA characteristics.
  • To compare the performance of engineered polyA tails against standard polyA tails and existing mRNA vaccine solutions.

Main Methods:

  • Designed 15 novel segmented polyA variants with varying lengths (~120-200 nucleotides) and spacer configurations.
  • Assessed DNA plasmid stability and mRNA homogeneity for each variant.
  • Evaluated mRNA translational activity and durability in cell culture.
  • Validated selected sequences in vivo and compared them to A90 tails and other controls.

Main Results:

  • Segmented polyA tails demonstrated improved stability during DNA amplification.
  • Frequent heteronucleotide insertions within polyA tails did not impede functionality.
  • A segmented polyA tail exceeding 200 nt [A30(CA15)11] significantly enhanced protein production (up to six-fold) compared to A90 tails.
  • Engineered polyA tails showed comparable or superior performance to existing mRNA vaccine solutions.

Conclusions:

  • Segmented polyA tail strategies effectively stabilize mRNA sequences during amplification and enhance translational efficiency.
  • Novel polyA modifications offer a promising avenue for improving mRNA therapeutics.
  • These findings expand the toolkit for designing advanced mRNA-based therapies.

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