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Updated: Jan 19, 2026

Non-Viral Engineering of Primary Human T Cells via Homology-Mediated End-Joining Targeted Integration of Large DNA Templates
Published on: May 9, 2025
AI-guided CAR designs and targeted pathway modulation to enhance multi-antigen CAR T cell durability and overcome
Mohammad Sufyan Ansari1, Varnit Chauhan1, Aashi Singh1
1Multidisciplinary Centre for Advanced Research and Studies, Jamia Millia Islamia, New Delhi, India.
Abstract:
The persistence of CAR T cells and antigen escape remain major barriers to durable therapeutic success in hematologic malignancies. Our study integrates AI-guided design with targeted protein degradation to overcome these challenges. Utilizing an in-silico library of CAR constructs followed by an in vitro screening, we developed a predictive model, CARMSeD, which forecasts constructs prone to self-activation and dysfunction. Optimized bispecific CD20/CD19 CAR T cells demonstrate superior persistence and anti-tumor efficacy. To further improve durability, the platform incorporates a PROTAC-based module that selectively degrades AKT3, promoting FOXO4-driven mitochondrial fitness, central memory differentiation, and reduced mTOR signaling. We extended this strategy to develop a trispecific CAR T platform co-expressing a secretable CD3/CD22 bispecific engager, achieving potent tumor eradication even in CD19/CD20-negative malignancies demonstrates efficacy across patient-derived leukemia samples and solid tumor models. Together, our study introduces a next-generation AI-guided CAR T strategy that integrates structure-based optimization and intracellular modulation to improve persistence, broaden antigen coverage, and ensure durable therapeutic efficacy.
Insights
This study introduces an AI-guided CAR T-cell therapy combining optimized constructs and targeted protein degradation to enhance persistence and efficacy against hematologic malignancies, even those with antigen escape.
Area of Science:
- Immunotherapy
- Artificial Intelligence
- Molecular Biology
Background:
- CAR T-cell therapy faces challenges with persistence and antigen escape in hematologic malignancies.
- Developing CAR T-cell constructs that resist dysfunction and improve durability is crucial for therapeutic success.
Purpose of the Study:
- To develop an AI-guided CAR T-cell platform integrating structure-based design and targeted protein degradation.
- To enhance CAR T-cell persistence, broaden antigen coverage, and achieve durable anti-tumor efficacy.
Main Methods:
- AI-guided design and in vitro screening to develop a predictive model (CARMSeD) for CAR construct optimization.
- Incorporation of a PROTAC-based module to selectively degrade AKT3, enhancing mitochondrial fitness and T-cell memory.
- Development of a trispecific CAR T platform with a secretable bispecific engager for broader antigen targeting.
Main Results:
- Optimized bispecific CD20/CD19 CAR T cells showed improved persistence and anti-tumor activity.
- The PROTAC module promoted central memory differentiation and reduced mTOR signaling.
- The trispecific platform achieved potent tumor eradication, including in antigen-negative models and patient samples.
Conclusions:
- This next-generation AI-guided CAR T strategy enhances T-cell persistence and broadens antigen targeting.
- The integration of structure-based optimization and intracellular modulation offers a promising approach for durable cancer therapy.
- The platform demonstrates significant potential across various hematologic malignancies and solid tumor models.
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