AI-guided CAR designs and targeted pathway modulation to enhance multi-antigen CAR T cell durability and overcome

Mohammad Sufyan Ansari1, Varnit Chauhan1, Aashi Singh1

  • 1Multidisciplinary Centre for Advanced Research and Studies, Jamia Millia Islamia, New Delhi, India.

Nature Communications
|January 17, 2026
PubMed

Insights

This study introduces an AI-guided CAR T-cell therapy combining optimized constructs and targeted protein degradation to enhance persistence and efficacy against hematologic malignancies, even those with antigen escape.

Area of Science:

  • Immunotherapy
  • Artificial Intelligence
  • Molecular Biology

Background:

  • CAR T-cell therapy faces challenges with persistence and antigen escape in hematologic malignancies.
  • Developing CAR T-cell constructs that resist dysfunction and improve durability is crucial for therapeutic success.

Purpose of the Study:

  • To develop an AI-guided CAR T-cell platform integrating structure-based design and targeted protein degradation.
  • To enhance CAR T-cell persistence, broaden antigen coverage, and achieve durable anti-tumor efficacy.

Main Methods:

  • AI-guided design and in vitro screening to develop a predictive model (CARMSeD) for CAR construct optimization.
  • Incorporation of a PROTAC-based module to selectively degrade AKT3, enhancing mitochondrial fitness and T-cell memory.
  • Development of a trispecific CAR T platform with a secretable bispecific engager for broader antigen targeting.

Main Results:

  • Optimized bispecific CD20/CD19 CAR T cells showed improved persistence and anti-tumor activity.
  • The PROTAC module promoted central memory differentiation and reduced mTOR signaling.
  • The trispecific platform achieved potent tumor eradication, including in antigen-negative models and patient samples.

Conclusions:

  • This next-generation AI-guided CAR T strategy enhances T-cell persistence and broadens antigen targeting.
  • The integration of structure-based optimization and intracellular modulation offers a promising approach for durable cancer therapy.
  • The platform demonstrates significant potential across various hematologic malignancies and solid tumor models.

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