Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

17.6K
We developed computational de novo protein design methods capable of tackling several important areas of protein design. To disseminate these methods we present Protein WISDOM, an online tool for protein design (http://www.proteinwisdom.org). Starting from a structural template, design of monomeric proteins for increased stability and complexes for increased binding affinity can be...
17.6K
Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining10:40

Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining

11.4K
This protocol describes a dynamic culture system to produce controlled size aggregates of human pluripotent stem cells and further stimulate differentiation in cerebellar organoids under chemically-defined and feeder-free conditions using a single-use...
11.4K
Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow08:58

Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow

620
This protocol provides a method for the systematic global optimization of genetically encoded biosensors through automation-assisted genetic library generation and assessment. This is coupled with design-of-experiment methodologies to streamline experimentation and enable the selection of genetic components to tune biosensors to specific design outcomes.
620
Generating De Novo Antigen-specific Human T Cell Receptors by Retroviral Transduction of Centric Hemichain08:48

Generating De Novo Antigen-specific Human T Cell Receptors by Retroviral Transduction of Centric Hemichain

9.0K
Herein we describe a novel method to generate antigen-specific T cell receptors (TCRs) by pairing the TCRα or TCRβ of an existing TCR, possessing the antigen-specificity of interest, with complementary hemichain of the peripheral T cell receptor repertoire. The de novo generated TCRs retain antigen-specificity with varying...
9.0K
Design and Optimization Strategies of a High-Performance Vented Box14:23

Design and Optimization Strategies of a High-Performance Vented Box

1.6K
Here, we present the range analysis method to optimize the sample points generated by an orthogonal experimental design to ensure that fresh food can be stored in a vented box for a long time by regulating the airflow...
1.6K
Procedure to Evaluate the Efficiency of Flocculants for the Removal of Dispersed Particles from Plant Extracts10:37

Procedure to Evaluate the Efficiency of Flocculants for the Removal of Dispersed Particles from Plant Extracts

9.3K
The design-of-experiments procedure presented here allows the evaluation of different flocculants in terms of their ability to aggregate dispersed particles in plant extracts, thus reducing turbidity and the costs of downstream...
9.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Thermodynamics-Informed Machine Learning of Organic Electrode Material Solubility in Nonaqueous Electrolytes.

The journal of physical chemistry. B·2026
Same author

Discovering Plastic-Binding Peptides with Favorable Affinity, Water Solubility, and Binding Specificity Through Deep Learning and Biophysical Modeling.

bioRxiv : the preprint server for biology·2026
Same author

MD-BAX: A general-purpose Bayesian design framework for molecular dynamics simulations with input-dependent noise.

The Journal of chemical physics·2026
Same author

Surrogate optimization of variational quantum circuits.

Proceedings of the National Academy of Sciences of the United States of America·2025
Same author

Zero-Shot Discovery of High-Performance, Low-Cost Organic Battery Materials Using Machine Learning.

Journal of the American Chemical Society·2024
Same author

Importance of Terrain and Climate for Predicting Soil Organic Carbon Is Highly Variable across Local to Continental Scales.

Environmental science & technology·2024

Related Experiment Video

Updated: Jan 20, 2026

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.6K

Generative Multiobjective Bayesian Optimization with Scalable Batch Evaluations for Sample-Efficient De Novo

Madhav R Muthyala1, Farshud Sorourifar2, Tianhong Tan1

  • 1Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States.

Industrial & Engineering Chemistry Research
|January 19, 2026
PubMed
Summary

This study introduces a new machine learning framework for molecular discovery that efficiently designs molecules with multiple objectives. The approach accelerates the discovery of novel materials, such as organic cathode materials for batteries.

More Related Videos

Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining
10:40

Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining

Published on: June 13, 2020

11.4K
Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow
08:58

Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow

Published on: October 17, 2025

620

Related Experiment Videos

Last Updated: Jan 20, 2026

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
10:58

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

Published on: July 25, 2013

17.6K
Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining
10:40

Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining

Published on: June 13, 2020

11.4K
Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow
08:58

Efficient Sampling of Genetically Encoded Biosensor Design Space Enabled with a Design of Experiments and Automation Workflow

Published on: October 17, 2025

620

Area of Science:

  • Computational chemistry and materials science.
  • Machine learning applications in molecular discovery.

Background:

  • Designing molecules with multiple objectives is challenging due to vast chemical space and simulation costs.
  • Existing machine learning methods often face scalability issues with continuous latent spaces.

Purpose of the Study:

  • To develop a modular "generate-then-optimize" framework for de novo multiobjective molecular design.
  • To improve the efficiency and scalability of molecular discovery using limited data.

Main Methods:

  • Utilizes a generative model to create diverse molecular candidates.
  • Introduces a novel acquisition function, qPMHI (multipoint Probability of Maximum Hypervolume Improvement), for optimal batch selection.
  • Employs Monte Carlo sampling for scalable batch selection based on probability ranking.

Main Results:

  • Demonstrates significant improvements over state-of-the-art methods on synthetic benchmarks and application-driven tasks.
  • Successfully identifies novel, diverse, and high-performing organic cathode materials for aqueous redox flow batteries.
  • The qPMHI acquisition function enables exact and scalable batch selection.

Conclusions:

  • The proposed framework offers a powerful and efficient approach to multiobjective molecular discovery.
  • This method accelerates the identification of promising molecular candidates for specific applications like sustainable energy storage.
  • The modular design and scalable selection process address key limitations of previous methods.