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Swabbing the Urban Environment - A Pipeline for Sampling and Detection of SARS-CoV-2 From Environmental Reservoirs
Published on: April 9, 2021
Molecular identification of potentially pathogenic free-living amoebae in environmental samples from urban areas of
Abbas Ali Ghasemi1, Elham Akhlaghi1, Zahra Babaei2
1Research Center for Hydatid Disease in Iran, Institute of Infectious Diseases and Tropical Medicine, Department of Parasitology, Afzalipour School of Medicine, Kerman University of Medical Sciences, Kerman, Iran.
Abstract:
Free-living amoebae (FLA) are widely distributed protozoans in various habitats. Some genera of these amoebae have the potential to be pathogenic to humans. The aim of this study was to identify the distribution of different FLA species in various environmental sources in Kerman, southeastern Iran. A total of 141 samples, including city fountains, tap water, and soil samples, were collected from various regions of the city. After filtration and cultivation on non-nutrient agar, molecular analysis was performed using PCR-sequencing with genus specific primers for Acanthamoeba, Balamuthia, Vahlkampfidae, and Hartmannella. PCR- sequencing fountain water samples revealed the presence of Acanthamoeba, Hartmannella and Naegleria species. Among the sequences obtained from Acanthamoeba isolates, 72.7 %, 18.2 %, and 9.1 % belonged to the genotype T4, T3, and T6, respectively. Two Naegleria species were identified as Naegleria canariensis and N. australiensis. Molecular analysis of tap water samples showed the presence of Acanthamoeba T6 genotype and Hartmannella (Vermamoeba) vermiformis. Sequencing of soil samples revealed the presence of Acanthamoeba lenticulata (T5) and Vermamoeba vermiformis species. The presence of potentially pathogenic FLA in urban environments in Iran presents potential hazards of infection for the people and appropriate measures needed to minimize the risks to human health including disinfection of water systems using chlorine dioxide, molecular monitoring, the implementation of educational measures for the public and health professionals.
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