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Amplification, Next-generation Sequencing, and Genomic DNA Mapping of Retroviral Integration Sites
Published on: March 22, 2016
Characterizing the molecular and clinical implications of NRG1 fusions in NSCLC through integrated RNA and DNA
Yue Fan1, Chenglu Zhang2, Minyi Zhu3
1Department of Traditional Chinese Medicine, Zhongshan Hospital, Fudan University, Shanghai, 200032, China.
Abstract:
NRG1 fusions are oncogenic drivers in non-small cell lung cancer (NSCLC), with therapeutic relevance highlighted by the FDA's designation of Zenocutuzumab for NRG1 fusion-positive cases. However, the molecular and clinical features of different NRG1 fusion types remain unclear. We retrospectively analyzed 435 NSCLC patients (78 NRG1 fusion-positive, 357 wild-type) from June 2016 to December 2023, using broad-panel DNA/RNA sequencing to assess mutational profiles, tumor mutation burden (TMB), chromosomal instability scores (CIS), and gene expression. Survival analyses were conducted in our cohort (N = 47) and the TCGA dataset (N = 526). Among NRG1-positive patients, 65.8% harbored recurrent fusion partners (e.g., CD74-NRG1, SLC3A2-NRG1), with CD74-NRG1 most frequent (48.1%). These patients showed fewer EGFR/KRAS mutations and lower TMB and CIS compared to wild-type cases (P < 0.01). The remaining 26 patients had unique singleton fusion partners, including 23 novel events such as CEBPD-NRG1 and BMP1-NRG1. This group exhibited significant enrichment of mutations in genes linked to DNA repair and oncogenic pathways (KRAS, MSH2, FANCI, etc.), affecting Fanconi anemia, mismatch repair, PI3K-AKT, and MAPK pathways (P < 0.01). RNA profiling revealed upregulation of DNAJB1 (P < 0.01) and LMNA (P = 0.02) in the singleton group, both associated with worse overall survival in TCGA (HR = 1.52). No significant difference in progression-free survival was seen following first-line EGFR TKI therapy between uncommon and wild-type groups. Our findings highlight the heterogeneity of NRG1 fusions in NSCLC, revealing novel fusions, unique pathway enrichments, and expression profiles that may inform future personalized treatment strategies.
Insights
NRG1 fusions drive non-small cell lung cancer (NSCLC), but types vary. This study found novel NRG1 fusions and unique pathway alterations, suggesting personalized treatment strategies for NSCLC patients.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- NRG1 fusions are key drivers in non-small cell lung cancer (NSCLC).
- Zenocutuzumab is FDA-designated for NRG1 fusion-positive NSCLC.
- Molecular and clinical features of diverse NRG1 fusion types require clarification.
Purpose of the Study:
- To investigate the molecular and clinical characteristics of different NRG1 fusion subtypes in NSCLC.
- To identify novel NRG1 fusions and associated mutational/expression profiles.
- To explore the clinical implications of NRG1 fusion heterogeneity for treatment strategies.
Main Methods:
- Retrospective analysis of 435 NSCLC patients (78 NRG1 fusion-positive, 357 wild-type) from June 2016 to December 2023.
- Broad-panel DNA/RNA sequencing to assess mutational profiles, tumor mutation burden (TMB), chromosomal instability scores (CIS), and gene expression.
- Survival analyses in a cohort and the TCGA dataset.
Main Results:
- Recurrent NRG1 fusions (e.g., CD74-NRG1) were found in 65.8% of fusion-positive cases.
- NRG1 fusion-positive patients had fewer EGFR/KRAS mutations and lower TMB/CIS than wild-type.
- A distinct group with novel singleton NRG1 fusions showed enrichment in DNA repair and oncogenic pathways (e.g., Fanconi anemia, MAPK).
- Upregulation of DNAJB1 and LMNA in the singleton group correlated with worse overall survival.
- No significant difference in progression-free survival with first-line EGFR TKI therapy between uncommon NRG1 fusions and wild-type groups.
Conclusions:
- NRG1 fusions in NSCLC exhibit significant heterogeneity, including novel fusion partners and distinct pathway enrichments.
- Singleton NRG1 fusions are associated with specific molecular alterations and potentially impact survival.
- Understanding NRG1 fusion diversity is crucial for developing personalized therapeutic approaches in NSCLC.
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