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Updated: Jan 22, 2026

Antibiotic Dereplication Using the Antibiotic Resistance Platform
Published on: October 17, 2019
Mapping Antibiotic Photocatalytic Transformation and Resistance Risks with a DFT-Informed Machine Learning Workflow
Chen-Chen Zhao1, Sihan Xing1, Cheng Fu1
1State Key Laboratory of Coordination Chemistry, School of Chemistry, Nanjing University, Nanjing, Jiangsu, 210023, P.R. China.
Photocatalytic degradation of antibiotics can create risky transformation products (TPs). This study developed a predictive framework using machine learning and DFT to assess TP risks, identifying high-risk species and prioritizing sustainable pollutant degradation.
Area of Science:
- Environmental Chemistry
- Computational Chemistry
- Ecotoxicology
Background:
- Photocatalytic degradation effectively removes antibiotics but can generate transformation products (TPs) with ecological risks, including antibiotic resistance gene (ARG) induction.
- Assessing the risks associated with these TPs is crucial for ensuring safe and sustainable water treatment.
Purpose of the Study:
- To develop a predictive framework for assessing the ecological risks of antibiotic transformation products (TPs) generated during photocatalytic degradation.
- To integrate experimental data, computational modeling, and machine learning to predict TP properties and prioritize sustainable degradation pathways.
Main Methods:
- Coupling photocatalytic experiments with high-resolution mass spectrometry, density functional theory (DFT) calculations, and machine learning (ML) models.
- Constructing extensive reaction networks and employing automatic transition-state searches to evaluate kinetic accessibility.
- Developing a multi-dimensional scoring system (DEBF) integrating diversity, ecotoxicity, biodegradability, and feasibility to prioritize degradation pathways.
Main Results:
- A reaction network of over 9,533 reactions was constructed for tetracycline degradation, and an ML model was trained to predict Gibbs free energy changes with DFT accuracy.
- The framework's generalizability was validated across five different antibiotics, involving 545 reactions.
- Several hydroxylated, aminated, and amide-ketone TPs were identified as high-risk due to enhanced ARG-binding potential.
Conclusions:
- The developed framework offers a generalizable, mechanism-anchored, and risk-aware approach for analyzing photocatalytic transformations.
- This method enables the derivation of design principles for pollutant degradation that balance efficiency with ecological safety.
- The study highlights the importance of considering TP risks in photocatalytic processes for environmental protection.
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