Related Experiment Video
Updated: Jan 22, 2026

Measurement of Chladni Mode Shapes with an Optical Lever Method
Published on: June 5, 2020
Substituent Size and Interaction Type Shape Sulfonylurea-β-Cyclodextrin Binding Modes
Minerva Valencia-Ortega1, Jorge Gutiérrez-Flores2, Eduardo H Huerta3
1Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, CU, Coyoacán, 04510 Ciudad de México, Mexico.
Abstract:
Sulfonylureas are hypoglycemic agents used in type 2 diabetes mellitus, although their low water solubility implies high therapeutic doses. Inclusion complexes with β-cyclodextrin (β-CD), a cyclic oligosaccharide featuring a hydrophobic interior and hydrophilic exterior, offer a supramolecular polymer capable of encapsulating drugs, improving solubility and stability. We explore how substituent size and interaction type influence the stability of β-CD complexes with p-toluenesulfonylurea, tolbutamide, and tolazamide. Using molecular dynamics simulations, clustering analysis, and quantum chemistry calculations at the M06-2X-D3/ACP-6-31G(d) + SMD level of theory, we identified the most stable binding modes. Boltzmann populations of complexes revealed a single dominant conformation for p-toluenesulfonylurea (∼97%), two major coexisting conformations for tolbutamide (75/25%), and two near-equal conformations for tolazamide (56/43%). Predominant conformations adopted by guest molecules are in line with experimental reports. Binding free energies, determined via molecular mechanics Poisson-Boltzmann surface area analysis, for p-toluensulfonylurea, tolbutamide and tolazamide in β-CD inclusion complexes, averaged -10.75, -13.42, and -12.84 kcal mol-1, respectively. Interaction energies increased with bulkier substituents, though this was partially offset by higher deformation costs. Analyses of ρ(r) showed that stabilization arises from networks of spatially distributed weak interactions rather than from strong directional intermolecular hydrogen bonds. These findings offer a detailed view of β-CD host-guest recognition within a carrier context, guiding the design of β-cyclodextrin-based systems to improve the formulation, stability, and therapeutic effectiveness of drugs in type 2 diabetes mellitus.
Related Concept Videos
Antihypertensive Drugs: Types of β-Blockers
Oral Hypoglycemic Agents: Sulfonylureas
Ligand Binding Sites
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Conserved Binding Sites
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
Molecular Shape and Polarity
The Equilibrium Binding Constant and Binding Strength

