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Updated: Jan 22, 2026

A Dual Tracer PET-MRI Protocol for the Quantitative Measure of Regional Brain Energy Substrates Uptake in the Rat
Published on: December 28, 2013
Human brain MRI data of intrathecally injected tracer evolution over 72 hours for data-integrated simulations
Jørgen N Riseth1,2, Timo Koch1,2,3, Sofie Lysholm Lian4
1Scientific Computing and Numerical Analysis (SCAN), Simula Research Laboratory, Oslo, Norway.
Abstract:
We present the Gonzo dataset: Brain MRI with processed and derivative data from one healthy male human volunteer ("Gonzo") before and during the 72 hours after intrathecal injection of the contrast agent gadobutrol into the cerebrospinal fluid (CSF) of the spinal canal. The MRI data records include images highlighting the temporal and spatial evolution of the contrast agent in CSF, brain, and adjacent structures. In addition to raw MRI, we provide derivatives that enable numerical simulations of the transport process under study. Derivatives include T1 maps, tracer concentration maps, diffusion tensor maps, and unstructured triangulated volume meshes of the brain geometry. We also provide brain region markers obtained by image segmentation. A regional statistical analysis of the concentration data complements the image data. The presented data can be used to study the transport behavior and the underlying processes of a tracer in the brain. It is intended to contribute to and inspire new studies on the understanding of tracer transport, method development for image analysis, and simulation of brain fluid transport processes.
Insights
The Gonzo dataset offers brain MRI scans and derived data tracking a contrast agent in the brain after injection. This valuable resource aids research into tracer transport and brain fluid dynamics.
Area of Science:
- Neuroimaging
- Biomedical Engineering
- Pharmacokinetics
Background:
- Understanding tracer distribution in the brain is crucial for drug delivery and disease research.
- Cerebrospinal fluid (CSF) dynamics play a significant role in brain homeostasis and waste clearance.
Purpose of the Study:
- To present the Gonzo dataset, a comprehensive collection of brain MRI data with processed derivatives.
- To facilitate research on tracer transport mechanisms within the brain and cerebrospinal fluid.
Main Methods:
- Acquisition of high-resolution brain MRI scans before and up to 72 hours post-intrathecal gadobutrol injection.
- Generation of derivative datasets including T1 maps, tracer concentration maps, diffusion tensor maps, and brain geometry meshes.
- Image segmentation for brain region identification and regional statistical analysis of tracer concentration.
Main Results:
- Detailed spatiotemporal evolution of the contrast agent gadobutrol within the CSF and brain structures.
- Provision of quantitative data (T1 maps, concentration maps) for numerical simulations.
- Segmentation masks enabling region-specific analysis of tracer distribution.
Conclusions:
- The Gonzo dataset provides a unique resource for studying tracer transport in the brain.
- Enables advancements in neuroimaging analysis methods and brain fluid transport simulations.
- Supports interdisciplinary research in neuroscience, medical imaging, and computational modeling.
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