Related Experiment Video
Updated: Jan 22, 2026

Three-dimensional Characterization of Interorganelle Contact Sites in Hepatocytes using Serial Section Electron Microscopy
Published on: June 9, 2022
Robust methods for the characterization of droplet behavior in molecular dynamics: from contact radius to contact
Farshad Esmaeilian1,2, Morteza Torabi Rad3, Masumeh Foroutan3
1Department of Chemistry, The University of Western Ontario, 1151 Richmond Street, London, Ontario, N6A 5B7, Canada. farshad.esmaeilian@proton.me.
Abstract:
We present a comparative analysis of methodologies for studies of wetting behavior of liquid nano-droplets. Different droplet sizes were simulated using molecular dynamics (MD) under both complete and partial wetting conditions. The results show why conventional root mean square displacement (RMSD) metrics are inadequate for capturing finite system dynamics based on internal, center of mass, and coupling contributions to its value. The z-component of the center of mass is proposed as an alternative, accurate descriptor. A new equation for the contact radius of nano-droplets is derived using the radius of gyration (Rg) of interfacial molecules. In addition, a modified sinc kernel smoother is employed to develop a new method for calculating the dynamic contact angle. The accuracy and robustness of both the new and conventional methods were evaluated through calculations of physical properties, including apparent line tension and contact angle. The apparent line tension is positive only in highly hydrophilic systems and negative otherwise. Young's contact angle shows consistent results across methods for hydrophilic cases but varies in hydrophobic systems, signifying its dependence on the droplet shape analysis technique. The proposed methods yield physically meaningful results and are more reliable than standard circle fitting techniques.
Related Concept Videos
Contact Angle
The adhesive force is the molecular force between molecules of different materials, that is, between the molecules of the solid and the liquid. The cohesive...
Transmission-based Precautions I: Contact, Enteric, and Droplets
Contact Precautions:
Contact precautions are the measures taken to prevent the transmission of infectious agents, especially epidemiologically important microorganisms such as MRSA or influenza, primarily transmitted through direct or indirect contact with an...
Contact-dependent Signaling
Gap Junctions
In animal cells, gap junctions are formed...
Radius of Gyration of an Area
Bones of the Upper Limb: Radius
The radius has a nail-shaped head, and a...
Schwarzschild Radius and Event Horizon
The minimum speed required to launch a projectile from the surface of an object to which it is gravitationally bound so that it eventually escapes the object’s gravitational field is called the escape velocity. The escape velocity is independent of the mass of the object. Merging the idea of escape...

