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Author Spotlight: Advancing the Analysis of Plasma Extracellular Vesicle Proteome for Cardiovascular Biomarker Studies
Published on: January 31, 2025
Proteomics Profiling Reveals Circulating Biomarkers and Dysregulated Pathways in Transthyretin Amyloid Cardiomyopathy
Ree Lu1, Ani Nalbandian1, Keitaro Akita1
1Division of Cardiology, Department of Medicine (R.L., A.N., K.A., M.S.M., Y.J.S.), Columbia University Irving Medical Center, New York, NY.
Insights
This study identified distinct proteomic profiles in transthyretin amyloid cardiomyopathy (ATTR-CM) compared to heart failure (HF) controls. Key signaling pathways like PI3K-Akt and JAK-STAT were found to be dysregulated in ATTR-CM.
Area of Science:
- Cardiology
- Proteomics
- Molecular Biology
Background:
- Transthyretin amyloid cardiomyopathy (ATTR-CM) is a restrictive cardiomyopathy leading to heart failure (HF).
- The specific signaling pathways involved in ATTR-CM pathogenesis remain largely undefined.
- Understanding these pathways is crucial for identifying therapeutic targets.
Purpose of the Study:
- To identify and characterize signaling pathways that are dysregulated in ATTR-CM.
- To compare the proteomic profile of ATTR-CM patients with control groups.
Main Methods:
- A case-control study design was employed, comparing ATTR-CM cases with internal controls (hypertensive left ventricular hypertrophy) and external controls (HF).
- Plasma proteomics profiling was performed on 7289 proteins.
- A sparse partial least squares discriminant analysis model was developed for classification, with external validation using HF controls.
Main Results:
- A proteomics-based model distinguished ATTR-CM from controls with 89% accuracy (AUC=0.89).
- The PI3K-Akt and JAK-STAT signaling pathways were identified as significantly dysregulated in ATTR-CM.
- Known pathways, including complement and coagulation cascades, also showed dysregulation.
Conclusions:
- ATTR-CM exhibits a unique proteomic signature compared to HF.
- The study elucidates novel and known dysregulated signaling pathways in ATTR-CM.
- These findings contribute to a better understanding of ATTR-CM pathophysiology.
Background:
Transthyretin amyloid cardiomyopathy (ATTR-CM) causes a restrictive cardiomyopathy resulting in heart failure (HF). Signaling pathways associated with ATTR-CM are not well defined. The purpose of this study was to identify signaling pathways that are dysregulated in ATTR-CM compared with controls.
Methods:
This was a case-control study of cases with ATTR-CM, internal controls with hypertensive left ventricular hypertrophy, and external controls with HF. For model development, ATTR-CM cases were age- and sex-matched with internal controls with hypertensive left ventricular hypertrophy. Plasma proteomics profiling of 7289 proteins was conducted. A sparse partial least squares discriminant analysis was performed to develop a proteomics-based discrimination model from 70% of the data (ie, the training set), and the discriminative ability was tested in the remaining 30% of the data (ie, the internal test set). External validation using HF controls was also conducted. Pathway analysis of significantly (ie, univariable P<10-6) dysregulated proteins was executed. Signaling pathways with a false discovery rate <0.05 were declared positive.
Results:
The analysis included 169 cases and 220 controls. A total of 211 discriminant proteins were identified in the training set from the proteomics-based model developed to distinguish ATTR-CM cases from 170 internal controls with hypertensive left ventricular hypertrophy. The area under the receiver-operating characteristic curve to discriminate ATTR-CM in the test set from 50 external controls with HF was 0.89 (95% CI, 0.82-0.96). The sensitivity was 0.90 (95% CI, 0.75-0.97), and the specificity was 0.86 (95% CI, 0.72-0.96). Pathway analysis revealed the PI3K-Akt (phosphoinositide-3-kinase-protein kinase) pathway and its related pathways (eg, JAK-STAT [Janus kinase-signal transducer and activator of transcription]) were dysregulated. Dysregulation of previously identified pathways, such as the complement and coagulation cascade pathways, was also observed.
Conclusions:
This study reveals a distinct proteomic profile of ATTR-CM compared with controls with HF, and elucidates both novel and known signaling pathways that are differentially regulated in ATTR-CM.
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