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Multi-Model Ensembles in Infectious Disease and Public Health: Methods, Interpretation, and Implementation in R.

Li Shandross1, Emily Howerton2, Lucie Contamin3

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Statistics in Medicine
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Summary
This summary is machine-generated.

Multi-model ensembles improve public health forecasts by combining predictions. The new hubEnsembles package offers a flexible framework and tutorial for practical application in infectious disease outbreak forecasting.

Keywords:
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Area of Science:

  • Computational epidemiology
  • Statistical modeling
  • Public health informatics

Background:

  • Multi-model ensembles are widely used in forecasting for performance benefits.
  • Their application is growing in public health for infectious disease outbreak prediction.
  • Challenges include interpreting diverse methods and lack of standardized software.

Purpose of the Study:

  • To introduce the statistical foundations of probabilistic forecasting and multi-model ensembles.
  • To present the hubEnsembles package as a flexible software framework.
  • To provide a tutorial and case study for practical ensemble generation.

Main Methods:

  • Introduction to statistical foundations of probabilistic forecasting.
  • Development and presentation of the hubEnsembles software package.
  • Tutorial and case study using real-world data from the FluSight Forecast Hub.

Main Results:

  • Demonstrated the utility of multi-model ensembles for improved outbreak forecasting.
  • Introduced a flexible framework (hubEnsembles) for practical ensemble generation.
  • Provided a reproducible case study for applying ensemble methods.

Conclusions:

  • Multi-model ensembles offer enhanced accuracy and reliability in public health forecasts.
  • The hubEnsembles package addresses practical challenges in generating and interpreting ensemble predictions.
  • Standardized tools are crucial for advancing the application of ensemble methods in epidemiology.