Related Experiment Video
Updated: Jan 25, 2026

Uracil-DNA Glycosylase Assay by Matrix-assisted Laser Desorption/Ionization Time-of-flight Mass Spectrometry Analysis
Published on: April 22, 2022
A coordinated haptic mechanism ensures efficient DNA sampling by the 8-oxoguanine glycosylase OGG1
Maximilien Martinez1, Ostiane D'Augustin2, Despoina-Maria Chousianiti3
1University Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, BIOSIT (Biologie, Santé, Innovation Technologique de Rennes) - UMS 3480, US 018, 35000 Rennes, France.
Abstract:
7,8-Dihydro-8-oxoguanine (8-oxoG), a frequent mutagenic base modification occurring upon oxidative stress, is handled by the DNA glycosylase OGG1 when paired with cytosine, initiating the base excision repair pathway. Since 8-oxoG neither significantly impacts the DNA structure nor blocks transcription and replication, its detection requires a careful inspection of each base pair by OGG1. By monitoring this lesion search process in vitro and in living cells, we uncover a tight coordination between several conserved amino acids encircling the DNA. More specifically, we show that the N149-151 motif, on the target strand, as well as residues R154 and R204, on the opposite strand, both regulate OGG1 engagement on the DNA to ensure fast Y203-mediated base unstacking, a prerequisite for efficient 8-oxoG detection. These findings highlight the mechanisms that enable OGG1 to maintain rapid DNA sampling kinetics while preserving specificity for 8-oxoG in the context of the chromatin architecture within the nucleus.
Related Concept Videos
Lattice Centering and Coordination Number
Types of Unit Cells
Imagine taking a large number of identical...
Coordination Number and Geometry
Mechanical Efficiency of Real Machines
However, in reality, no machine can be truly ideal, and all of them experience some...
Coordination Compounds and Nomenclature
Equations of Motion: Rectangular Coordinates and Cylindrical Coordinates
When a particle moves relative to an inertial frame, the equations of motion can be expressed using rectangular components. If the motion is confined to the x-y plane, the equations having the x and y coordinates only can be used to simplify the mathematical representation.
However, when particles...
Spherical Coordinates

