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Published on: August 16, 2020
Prioritizing steatogenic chemicals through integration ToxCast™ data, machine learning, and experimental validation.
Xiaoliu Shi1, Lingbing Jin1, Xiaochun Ma1
1School of Life Science, Zhejiang Chinese Medical University, Hangzhou, Zhejiang 310053, China.
Identifying potent steatogenic chemicals is crucial for metabolic disease regulation. This study integrates high-throughput screening data and predictive modeling to prioritize chemicals causing fatty liver disease, validating findings with in vivo and in vitro experiments.
Area of Science:
- Toxicology
- Environmental Health
- Metabolic Disease Research
Background:
- Hepatic steatosis (fatty liver disease) is a growing global health concern linked to environmental exposures.
- Effective risk-oriented regulation requires identifying and prioritizing chemicals with high steatogenic potency.
Purpose of the Study:
- To develop and validate a predictive model for identifying high-potency steatogenic chemicals.
- To integrate high-throughput screening data with in vivo and in vitro experimental validation.
Main Methods:
- Leveraged the adverse outcome pathway framework for hepatic steatosis.
- Integrated ToxPi scores from ToxCast™ database with zebrafish in vivo validation.
- Employed Support Vector Machine (SVM) and Random Walk with Restart algorithms for prediction and categorization.
Main Results:
- Developed a SVM model with 91.7% accuracy on the training set and 77.1% on external validation.
- Categorized 345 curated chemicals: 37.97% high-potency, 18.84% moderate-potency, 43.19% null-effect.
- Confirmed high steatogenic potency for emerging contaminants like isodecyl diphenyl phosphate and tetrabromobisphenol A bis(2-hydroxyethyl) ether.
Conclusions:
- The integrated approach effectively prioritizes high-potent steatogenic chemicals.
- Findings highlight the risk posed by several emerging environmental contaminants.
- This methodology supports robust toxicological and environmental risk assessment.
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