Related Experiment Video
Updated: Jan 26, 2026

Microcrystal Electron Diffraction of Small Molecules
Published on: March 15, 2021
Mode-dependent phonon relaxation in time-resolved electron diffraction pattern simulations
Wojciech Marciniak1, Joanna Marciniak2, José Ángel Castellanos-Reyes3
1Department of Physics and Astronomy, Uppsala University, P.O. Box 516, 75120, Uppsala, Sweden; Institute of Physics, Poznań University of Technology, Piotrowo 3, 60-965, Poznań, Poland.
Abstract:
Time-resolved pump-probe experiments offer unique possibilities for studying ultrafast processes; however, simulation tools for interpreting phonon dynamics in electron diffraction patterns at the sub-picosecond scale remain limited. We introduce the frozen trajectory excitation (FTE) method of exciting phonons beyond their thermal equilibrium population by modifying a molecular dynamics trajectory in the (q→,ω)-space, and couple it with a new approach to ensemble sampling that extends frozen phonon multislice simulations into the time domain. In this approach, phonons with a certain natural frequency (ω) and located within an arbitrarily selected range of phonon wave vector (q→) are first selectively excited within a single molecular dynamics trajectory. Subsequently, several parallel relaxation runs are started at random points, and snapshots from these trajectories serve as inputs for multislice simulations at defined time delays. We apply this framework to fcc Ni with relaxation time resolution of 10fs. The simulations reveal multi-phonon scattering processes as well as strong mode dependence in phonon relaxation, highlighting the importance of considering phonon-specific behavior in ultrafast dynamics. Our results show that mode-dependent relaxation leaves measurable signatures in diffraction patterns, providing predictive guidance for future time-resolved TEM studies.
Related Concept Videos
Interference and Diffraction
Chronopharmacokinetics: Time-Dependent Pharmacokinetics
Time-dependent pharmacokinetics refers to non-cyclical changes in drug rate processes over a period of time. It can lead to nonlinear pharmacokinetics, where the relationship between drug concentration and time is not proportional. Non-cyclical...
The Integrated Rate Law: The Dependence of Concentration on Time
What is a Mode?
There can be more than one mode in a data set if multiple values have the same highest frequency. For instance, suppose that the Statistics exam scores of 20 students are: 50; 53; 59; 59; 63; 63; 72; 72; 72; 72; 72; 76; 78; 81; 83; 84; 84; 84; 90; 93. Here, the mode is 72, as it occurs most frequently, five times.
A data set with two modes is called bimodal. For example,...
Relaxation of Skeletal Muscles
When an action potential reaches the axon terminal, it depolarizes the membrane and opens voltage-gated sodium channels. Sodium ions enter the cell, further depolarizing the presynaptic membrane. This depolarization causes voltage-gated calcium channels to open....
Frequency-dependent Selection

