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Updated: Jan 28, 2026

Automation of the Micronucleus Assay Using Imaging Flow Cytometry and Artificial Intelligence
Published on: January 27, 2023
Label-Free Holographic Imaging Flow Cytometry With Deep-Learning-Based Detection and Classification of Thousands of
Dana Yagoda-Aharoni1, Eden Dotan1, Matan Dudaie1
1School of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Israel.
We developed a fast, label-free cell analysis method using digital holography and neural networks. This technique enables real-time detection and classification of cells, significantly advancing imaging flow cytometry for diagnostics.
Area of Science:
- Biomedical Engineering
- Computational Biology
- Optical Imaging
Background:
- Label-free imaging flow cytometry is crucial for real-time cell analysis.
- Current methods often require chemical staining or lack speed for high-throughput applications.
- Digital holography offers detailed cellular structure information without staining.
Purpose of the Study:
- To introduce a novel end-to-end neural network for real-time, label-free cell detection and classification.
- To achieve high-speed imaging flow cytometry using digital holography and quantitative phase imaging.
- To demonstrate the method's adaptability across different cell types and conditions.
Main Methods:
- Developed a custom two-stage neural network integrating fixed convolution layers with image processing filters for detection.
- Utilized two subsequent convolutional layers for classifying detected cells.
- Employed label-free quantitative imaging flow cytometry based on digital holography for cell imaging during flow.
Main Results:
- Achieved cell detection and classification in 0.44 milliseconds, enabling real-time analysis.
- Demonstrated over 10x speedup compared to existing methods like YOLOv8n.
- Successfully validated the method on T-cells and cancer cells, showing adaptability.
- Enabled imaging, detection, and classification of thousands of cells per second.
Conclusions:
- The proposed neural network approach facilitates high-throughput, label-free imaging flow cytometry.
- This method offers a significant speedup for real-time cell analysis, reducing computational complexity.
- Potential applications include real-time cell monitoring, early disease detection, and high-speed diagnostics.
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