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The dynamics of transposable element content in the genome of the human pathogen Histoplasma
Tania Kurbessoian1, David A Turissini1, Patrick W Kelly1
1Department of Biology, University of North Carolina at Chapel Hill, 27599 Chapel Hill, NC, USA.
Abstract:
Histoplasma is a genus of human fungal pathogens that frequently affects immunosuppressed patients. Previous genetic surveys have largely focused on nucleotide-level variation, but much less attention has been given to more complex forms of mutation. Among these, transposable elements (TEs) represent an important class of mobile genetic elements that can alter genome size and play key roles in adaptation and speciation. In this study, we address this gap by examining the content and evolutionary dynamics of TEs in the human pathogen Histoplasma. Using previously published Histoplasma genome assemblies, we quantified TE content across eight phylogenetic species within the genus. Our analyses reveal heterogeneity in the evolutionary patterns of different TE families. The majority of TE orders and superfamilies show strong phylogenetic signal suggesting that phylogenetic relatedness significantly constrains the content of mobile genetic elements. We find no correlation between RNA or DNA TEs and genome size. Together, our results highlight the diverse landscape of TEs in Histoplasma and suggest that future studies should investigate their impact on genome evolution, fitness, and virulence.
Insights
Transposable elements (TEs) in the fungal pathogen Histoplasma show diverse evolutionary patterns, largely influenced by phylogenetic relationships. These mobile genetic elements do not correlate with genome size, highlighting their complex role in fungal evolution.
Area of Science:
- Mycology
- Genomics
- Evolutionary Biology
Background:
- Histoplasma is a fungal pathogen affecting immunocompromised individuals.
- Genetic studies often overlook complex mutations like transposable elements (TEs).
- TEs are mobile genetic elements impacting genome size, adaptation, and speciation.
Purpose of the Study:
- To investigate the content and evolutionary dynamics of TEs in the genus Histoplasma.
- To analyze TE heterogeneity across eight phylogenetic species of Histoplasma.
- To understand the constraints on TE evolution within this fungal genus.
Main Methods:
- Utilized existing genome assemblies of Histoplasma species.
- Quantified transposable element (TE) content across the genus.
- Analyzed TE orders and superfamilies for phylogenetic signals.
Main Results:
- Revealed significant heterogeneity in TE family evolution within Histoplasma.
- Demonstrated that phylogenetic relatedness strongly constrains TE content.
- Found no correlation between RNA or DNA TEs and overall genome size.
Conclusions:
- The evolutionary landscape of TEs in Histoplasma is diverse and phylogenetically constrained.
- Future research should explore the impact of TEs on Histoplasma genome evolution, fitness, and virulence.
- Understanding TE dynamics is crucial for studying fungal pathogen adaptation and pathogenicity.
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