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A Fluorogenic Peptide Cleavage Assay to Screen for Proteolytic Activity: Applications for coronavirus spike protein activation
Published on: January 9, 2019
Neutralizing activity analysis of mimotopes against porcine epidemic diarrhea virus (PEDV) spike protein
Tae-Hun Kim1, Jae-Yeon Park2, Soonil Kwon1
1Department of Materials Science and Engineering, Yonsei University, 50 Yonsei-Ro, Seodaemun-Gu, Seoul, 03722, Republic of Korea.
Abstract:
Mimotopes of the porcine epidemic diarrhea virus (PEDV) spike protein (SP) were screened from a Fv-antibody library, and the neutralizing activity of screened mimotopes was analyzed using plaque assay and docking simulation. The screened Fv-antibody (mimotopes) corresponded to the variable region of the heavy chain of immunoglobulin G, composed of three complementarity-determining regions (CDRs) and four framework regions. The Fv-antibody library was constructed by randomizing the amino acid sequence of CDR3 and expressed on the outer membrane of E. coli using auto-display technology. Monoclonal anti-PEDV SP antibody was used as probes to screen Fv-antibodies mimicking PEDV SP from the library. Two screened Fv-antibodies (mimotopes of PEDV SP) with binding affinity to the monoclonal antibody were expressed as soluble proteins, and their binding affinity was estimated using a surface plasmon resonance biosensor. The neutralizing activity of PEDV SP mimotopes to prevent PEDV infection was calculated using a plaque assay based on the cytopathic effect. Additionally, molecular docking simulations were performed to examine the interactions of PEDV SP mimotopes with ACE2 receptor as well as APN which had been considered infection-related receptors for coronavirus.
Insights
Researchers screened mimotopes targeting the porcine epidemic diarrhea virus (PEDV) spike protein (SP). These mimotopes showed neutralizing activity against PEDV infection, offering potential therapeutic strategies.
Area of Science:
- Virology
- Immunology
- Biotechnology
Background:
- Porcine epidemic diarrhea virus (PEDV) poses a significant threat to swine health.
- The PEDV spike protein (SP) is a key target for neutralizing antibodies.
- Developing effective antiviral strategies against PEDV is crucial for the agricultural industry.
Purpose of the Study:
- To screen for mimotopes of the PEDV spike protein (SP) from an Fv-antibody library.
- To analyze the neutralizing activity of the identified mimotopes against PEDV.
- To investigate the interaction of mimotopes with host cell receptors involved in viral entry.
Main Methods:
- Construction of an Fv-antibody library using auto-display technology with randomized CDR3 sequences.
- Screening of Fv-antibodies (mimotopes) using monoclonal anti-PEDV SP antibody as probes.
- Expression and purification of soluble Fv-antibodies.
- Affinity analysis using surface plasmon resonance biosensor.
- Neutralizing activity assessment via plaque assay.
- Molecular docking simulations with ACE2 and APN receptors.
Main Results:
- Two Fv-antibodies (mimotopes) with binding affinity to the monoclonal antibody were identified.
- The screened mimotopes demonstrated significant neutralizing activity against PEDV infection in plaque assays.
- Molecular docking simulations provided insights into the potential interactions of mimotopes with host cell receptors.
Conclusions:
- The identified mimotopes effectively bind to PEDV SP and exhibit neutralizing properties.
- These mimotopes hold promise as potential therapeutic agents for preventing PEDV infection.
- Further research into the precise mechanisms of action and in vivo efficacy is warranted.
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