Decrypting potential mechanisms linking ochratoxin A to hepatocellular carcinoma: an integrated approach combining
Junyi Zhuo1, Hua Wu2, Xiaoling Zhou3
1Department of Gastroenterology, The People's Hospital of Leshan, Southwest Medical University, No. 639 Huian Road, Leshan, Sichuan, 614000, China.
Background:
Ochratoxin A (OTA), a common food-borne mycotoxin, is a potential human carcinogen, yet the specific molecular mechanisms linking it to hepatocellular carcinoma (HCC) remain unclear.
Methods:
We integrated network toxicology to predict OTA targets and intersected them with HCC transcriptomic data to identify key candidate genes. Functional enrichment analysis was then conducted. Multiple machine learning algorithms were applied to screen and validate core genes. Furthermore, molecular docking and molecular dynamics (MD) simulations were employed to evaluate the binding stability between OTA and key target proteins.
Results:
A total of 50 key genes were identified as potential targets for potential OTA-associated hepatocarcinogenesis. Enrichment analysis revealed their significant involvement in critical processes such as xenobiotic metabolism and oxidative stress response. Machine learning analysis prioritized eight core genes (AURKA, GABARAPL1, CA2, PARP1, LMNA, SLC27A5, EPHX2, and GSTP1), and a combined diagnostic model demonstrated outstanding performance (AUC = 0.986). Structural analyses via molecular docking and MD simulations confirmed stable binding interactions between OTA and these core targets.
Conclusions:
This integrated computational study identifies a set of candidate genes through which OTA may potentially interact with HCC-associated molecular networks. The robust binding predicted between OTA and the core targets provides a structural basis for these interactions. These findings offer a prioritized list of targets and a theoretical framework for subsequent experimental validation and investigation into OTA's toxicological role in HCC.
Insights
Ochratoxin A (OTA), a food toxin, may cause liver cancer (HCC) by affecting key genes involved in metabolism and stress. Computational analysis identified eight core genes and confirmed stable binding, providing targets for future research.
Area of Science:
- Toxicology
- Computational Biology
- Genomics
Background:
- Ochratoxin A (OTA) is a prevalent foodborne mycotoxin with carcinogenic potential.
- The molecular mechanisms linking OTA exposure to hepatocellular carcinoma (HCC) are not fully understood.
Purpose of the Study:
- To identify molecular targets of OTA involved in HCC pathogenesis.
- To elucidate the binding interactions between OTA and its key targets.
Main Methods:
- Integrated network toxicology and transcriptomic data analysis to predict OTA targets.
- Functional enrichment analysis and machine learning to identify core genes.
- Molecular docking and simulations to assess binding stability.
Main Results:
- Identified 50 key genes implicated in OTA-associated hepatocarcinogenesis.
- Prioritized eight core genes (e.g., AURKA, GSTP1) involved in xenobiotic metabolism and oxidative stress.
- Developed a diagnostic model with high accuracy (AUC=0.986) and confirmed stable OTA-target binding.
Conclusions:
- This study identifies candidate genes and molecular networks through which OTA may contribute to HCC.
- Predicted stable binding interactions provide a structural basis for OTA's toxicological role in HCC.
- Findings offer a validated list of targets for experimental investigation into OTA-induced liver cancer.
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