Prenatal Use of Exome Sequencing and Chromosomal Microarray Analysis: Indications, Interpretation, and Gene Selection
Laia Rodriguez-Revenga1,2,3, Victoria Ardiles-Ruesjas2,4, Antoni Borrell4,5
1Biochemistry and Molecular Genetics Department (CDB), Hospital Clínic of Barcelona, 08036 Barcelona, Spain.
Diagnostics (Basel, Switzerland)
|January 28, 2026
Summary
Chromosomal microarray analysis (CMA) and exome sequencing (ES) are key prenatal genetic tests. While CMA is standard for fetal anomalies, ES is for selected cases, with interpretation challenges impacting counseling.
Area of Science:
- Genomics
- Prenatal Diagnostics
- Medical Genetics
Background:
- Genomic technologies are advancing, necessitating understanding of prenatal testing.
- Chromosomal microarray analysis (CMA) and exome sequencing (ES) are crucial complementary tools.
Purpose of the Study:
- To review the technical principles of CMA and ES.
- To compare their diagnostic capabilities and limitations in prenatal testing.
Main Methods:
- Narrative literature review.
- Manual screening of reference lists from key publications.
Main Results:
- CMA is increasingly standard for fetal structural anomalies; ES is used for selected cases.
- Interpretation of variants of uncertain significance and incidental findings poses challenges.
- Agnostic gene selection in ES shows higher diagnostic yield than phenotype-driven approaches.
Conclusions:
- Refining clinical indications, bioinformatics, and variant classification is critical for accurate prenatal genomic results.
- Improvements in technology, interpretation, and clinical integration can enhance prenatal genomics.
- Ongoing advancements aim for more precise, informed, and ethically responsible prenatal genetic testing.
Keywords:
chromosomal microarray analysisclinical relevancediagnosisexome sequencinggenetic abnormalitiesprenatal diagnosisMore Related Videos
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