RNA Sequencing and Targeted Knockdown Reveal miR-142a-5p as a Driver of Retinal Degeneration in rd1 Mice

Na Yang1,2, Meng Zhao1,2, Nan Guo1,2

  • 1Laboratory of Visual Cell Differentiation and Regulation, Basic Medical College, Zhengzhou University, Zhengzhou 450001, China.

Biology
|January 28, 2026
PubMed

Insights

MicroRNAs play a role in retinitis pigmentosa (RP), an inherited retinal disease. Targeting miR-142a-5p shows promise for preserving vision and treating RP.

Area of Science:

  • Ophthalmology
  • Genetics
  • Molecular Biology

Background:

  • Retinitis pigmentosa (RP) is an inherited retinal disorder causing progressive photoreceptor degeneration and blindness.
  • Current treatment options for RP are limited.
  • MicroRNAs (miRNAs) are increasingly implicated in retinal disease pathogenesis, but their specific roles in RP are not fully understood.

Purpose of the Study:

  • To investigate miRNA expression profiles in a mouse model of RP.
  • To identify specific miRNAs involved in RP pathogenesis.
  • To evaluate the therapeutic potential of targeting key miRNAs in RP.

Main Methods:

  • High-throughput RNA sequencing was used to profile miRNA expression in rd1 RP mouse retinas at postnatal day 14.
  • Differential miRNA expression analysis was performed comparing rd1 retinas to control retinas.
  • miR-142a-5p function was assessed in vivo through knockdown experiments in rd1 mice.

Main Results:

  • A total of 40 miRNAs were upregulated and 27 were downregulated in rd1 retinas compared to controls.
  • Significantly elevated miRNAs included miR-142a-5p, miR-223-3p, and miR-653-5p.
  • Knockdown of miR-142a-5p in rd1 mice led to improved retinal function and preserved outer nuclear layer thickness.

Conclusions:

  • miR-142a-5p is significantly upregulated in RP retinas and contributes to photoreceptor degeneration.
  • Targeting miR-142a-5p demonstrates a protective effect against vision loss in RP.
  • miR-142a-5p represents a potential therapeutic target for retinitis pigmentosa and other retinal degenerative diseases.

Related Concept Videos

RNA Interference01:23

RNA Interference

RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
28.0K
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
60.6K
RNA Stability01:53

RNA Stability

Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.7K
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
32.7K
RNA Editing02:23

RNA Editing

RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.9K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
27.0K