AI-Resolved Protein Energy Landscapes, Electrodynamics, and Fluidic Microcircuits as a Unified Framework for...

Research shows that neurodegenerative processes do not develop from a single "broken" biochemistry process; rather, they develop when a complex multi-physics environment gradually loses its ability to stabilize the neuron via a collective action between the protein, ion, field and fluid dynamics of the neuron. The use of new technologies such as quantum-informed molecular simulation (QIMS), dielectric nanoscale mapping, fluid dynamics of the cell, and imaging of perivascular flow are allowing researchers to understand how the collective interactions among proteins, membranes and their electrical properties, along with fluid dynamics within the cell, form a highly interconnected dynamic system. These systems require fine control over the energetic, mechanical and electrical interactions that maintain their coherence. When there is even a small change in the protein conformations, the electric properties of the membrane, or the viscosity of the cell's interior, it can cause changes in the high dimensional space in which the system operates to lose some of its stabilizing curvature and become prone to instability well before structural pathologies become apparent. AI has allowed researchers to create digital twin models using combined physical data from multiple scales and to predict the trajectory of the neural system toward instability by identifying signs of early deformation. Preliminary studies suggest that deviations in the ergodicity of metabolic-mechanical systems, contraction of dissipative bandwidth, and fragmentation of attractor basins could be indicators of vulnerability. This study will attempt to combine all of the current research into a cohesive view of the role of progressive loss of multi-physics coherence in neurodegenerative disease. Through integration of protein energetics, electrodynamic drift, and hydrodynamic irregularities, as well as predictive modeling utilizing AI, the authors will provide mechanistic insights and discuss potential approaches to early detection, targeted stabilization, and precision-guided interventions based on neurophysics.