Molecular Characterization of Avulaviruses Isolated from Mallard Ducks in Moscow in 2008-2024

Species of the orders Charadriiformes and Anseriformes serve as the primary long-distance disseminators of various avulaviruses. The most economically significant among them is Newcastle disease virus (NDV), or Avian orthoavulavirus 1 (AOAV-1), which causes diseases of varying severity in both domestic and wild birds. Other avulaviruses have been studied to a much lesser extent, and for most of them, only single isolates are known, which does not allow a comprehensive assessment of their potential threat. To evaluate the biological diversity and potential risks posed by avian paramyxoviruses spread by wild waterfowl during autumn migration, fecal samples from mallards (Anas platyrhynchos) (n = 3604) were collected at water bodies in Moscow and the Moscow Region between 2008 and 2024. From these samples, AOAV-1 (n = 4) and Avian paraavulavirus 4 (APMV-4) (n = 9) were isolated and partially sequenced. Phylogenetic analysis revealed that all AOAV-1 isolates belong to genotype 1 of class II, while all APMV-4 isolates belong to the Eurasian subgenotype of genotype 1. Analysis of the F protein cleavage site motif indicated conformity with the consensus sequences characteristic of lentogenic and non-pathogenic avian paramyxoviruses in all isolates.