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Variability Regularized Feature Selection (VaRFS) for optimal identification of robust and discriminable features
Amir Reza Sadri1, Sepideh Azarianpour1, Prathyush Chirra1
1Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA.
We developed Variability Regularized Feature Selection (VaRFS) to improve machine learning models using medical imaging. VaRFS identifies robust features, enhancing prediction accuracy across diverse datasets.
Area of Science:
- Medical Imaging Analysis
- Machine Learning in Healthcare
- Radiomics and Computational Pathology
Background:
- Machine learning models using computerized features from medical imaging show promise for disease prediction and prognosis.
- Model performance is often limited by feature robustness to variations in imaging institutions and acquisition protocols.
Purpose of the Study:
- To propose Variability Regularized Feature Selection (VaRFS), a novel framework to enhance feature selection for medical imaging.
- To identify imaging features that are discriminative between outcome groups and generalizable across different imaging conditions.
Main Methods:
- VaRFS integrates feature variability into a regularization term within the Least Absolute Shrinkage and Selection Operator (LASSO) framework.
- A novel sparse regularization strategy is employed, with confirmed convergence guarantees and an accelerated proximal variant for computational efficiency.
- The framework was evaluated on over 700 multi-institutional imaging datasets across five clinical applications.
Main Results:
- VaRFS consistently achieved higher classifier Area Under the Curve (AUC) values in hold-out validation compared to three conventional feature selection methods.
- The method demonstrated effectiveness in balancing feature reproducibility, sparsity, and discriminability.
- Successful application across disease detection, treatment response characterization, and risk stratification was shown.
Conclusions:
- Variability Regularized Feature Selection (VaRFS) offers a robust approach for selecting generalizable and discriminative features from medical imaging data.
- This framework improves the reliability and performance of machine learning models in clinical applications.
- VaRFS addresses the critical challenge of imaging variability, paving the way for more dependable AI-driven diagnostics and prognostics.
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