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An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
Published on: November 3, 2010
Genetic associations of circulating plasma proteins with cardiometabolic diseases
Ruixin Zhou1, Jun Qiao1, Xiuzhen Zhang2
1Department of Pharmacology, SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology; Department of Geriatrics, Shenzhen People's Hospital (the First Affiliated Hospital of Southern University of Science and Technology), Shenzhen, 518055, Guangdong, China.
Insights
This study identified causal plasma proteins linked to cardiovascular diseases and metabolic issues. Six proteins show therapeutic potential, advancing drug discovery for these common conditions.
Area of Science:
- Genetics
- Proteomics
- Cardiovascular Medicine
- Metabolic Disorders
Background:
- Cardiovascular disease (CVD) is a leading global cause of mortality, with metabolic abnormalities as a key risk factor.
- Understanding the interplay between plasma proteins, CVD, and metabolic traits is crucial for developing effective interventions.
Purpose of the Study:
- To investigate the causal relationships between plasma proteins and six major cardiovascular diseases.
- To explore the links between plasma proteins and 19 different metabolic traits.
- To identify potential therapeutic targets for cardiovascular diseases with metabolic components.
Main Methods:
- Utilized summary-data-based Mendelian randomization (MR) and colocalization analysis.
- Cross-validated findings across two proteomic platforms.
- Conducted phenome-wide MR analysis to assess therapeutic potential.
Main Results:
- Identified 49 proteins genetically associated with cardiovascular diseases, with 35 also linked to metabolic phenotypes.
- Six proteins demonstrated evidence of colocalization, indicating shared causal pathways.
- PCSK9 is an established therapy; DUSP13B, LRIG1, APOH, INHBC, and GUSB show significant therapeutic promise.
Conclusions:
- This research elucidates causal plasma proteins contributing to cardiovascular diseases and metabolic abnormalities.
- The findings enhance the understanding of disease mechanisms.
- Identified novel protein targets that can facilitate future drug discovery and development for CVD.
Background:
Cardiovascular disease is the leading cause of death worldwide, and its risk is closely linked to metabolic abnormalities. Through summary-data-based mendelian randomization and colocalization analysis, we investigate the causal relationships between plasma proteins, six cardiovascular diseases (atrial fibrillation, coronary artery disease, heart failure, venous thromboembolism, peripheral artery disease and stroke), and 19 metabolic traits (including anthropometric phenotypes, blood pressure, glycemic phenotypes, inflammatory phenotypes, kidney-related phenotypes, lipidemic phenotypes, and liver-related phenotypes).
Results:
We identify 49 proteins genetically associated with cardiovascular diseases, validated across two proteomic platforms. Among them, 35 are also associated with one or more metabolic phenotypes, with six showing evidence of colocalization. These six candidate proteins are classified into three categories based on drug development status, with PCSK9 already successful in therapies for cardiovascular diseases and hypercholesterolemia. DUSP13B, LRIG1, APOH, INHBC, and GUSB also demonstrate high therapeutic potential. Further phenome-wide MR analysis indicates that INHBC, APOH and DUSP13B represent promising therapeutic targets for cardiovascular diseases characterized by metabolic disorders.
Conclusions:
Overall, this study revealed causal plasma proteins underlying the onset of cardiovascular diseases and metabolic abnormalities, advancing the understanding of disease mechanisms and facilitating drug discovery.
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