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Updated: Jan 31, 2026

Parallel High Throughput Single Molecule Kinetic Assay for Site-Specific DNA Cleavage
Published on: May 6, 2020
From sequence to function: Bridging single-molecule kinetics and molecular diversity
A N Kapanidis1,2, L Muras3, K Sreenivasa4
1Department of Physics, University of Oxford, Oxford, UK.
New single-molecule techniques enable large-scale analysis of nucleic acid and protein sequences. These methods link molecular sequence, structure, dynamics, and function, advancing drug discovery and genomics.
Area of Science:
- Molecular Biology
- Biophysics
- Genomics
Background:
- Biological function is dictated by nucleic acid and protein sequences.
- Nucleic acids possess physicochemical properties influencing structure, dynamics, and interactions.
- Understanding sequence-property relationships requires methods capturing molecular diversity and dynamics.
Purpose of the Study:
- To explore advanced single-molecule techniques for analyzing molecular dynamics at scale.
- To bridge the gap between molecular sequence, structure, dynamics, and biological function.
Main Methods:
- Utilizing highly multiplexed single-molecule approaches.
- Observing molecular dynamics across millions of individual molecules and thousands of sequences.
- Developing scalable methods for analyzing sequence-dependent energetic landscapes.
Main Results:
- Demonstrated ability to observe molecular dynamics across a vast number of molecules and sequences.
- Initiated the integration of sequence, structure, dynamics, and function analysis at scale.
- Showcased the potential of these advanced techniques in various biological applications.
Conclusions:
- Highly multiplexed single-molecule methods are revolutionizing the study of sequence-function relationships.
- These techniques offer unprecedented opportunities for drug discovery, molecular diagnostics, and functional genomics.
- Ongoing development promises further advancements in understanding molecular behavior at scale.
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