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Use of Alu Element Containing Minigenes to Analyze Circular RNAs
Published on: March 10, 2020
Cancer stemness-modulating circular RNAs in colorectal tumorigenesis: target proteins and regulatory mechanisms
Chiu-Jung Huang1, Kong Bung Choo2
1Department of Animal Science & Graduate Institute of Biotechnology, College of Environmental Planning & Bioresources (former School of Agriculture), Chinese Culture University, Taipei, 11114, Taiwan.
Abstract:
Cancer stem cells (CSCs), a small subpopulation of tumor cells with well-defined traits, play critical roles in tumorigenesis. Circular RNAs (circRNAs) have emerged as important regulators of cancer stemness and tumorigenesis. Applying stringent selection criteria, this review aims to systematically evaluate the literature to functionally define a distinct class of cancer stemness-modulating circRNAs (CSM-circRNAs) in colorectal cancer (CRC). In CRC, fourteen dysregulated CSM-circRNAs are identified all of which were validated in spheroid formation assays and expression of multiple stemness markers. All CSM-circRNAs, except circFNDC3B, are up-regulated in CRC, and many (7/14) are selectively pan-cancer dysregulated. Most (9/14) act through miRNA sponging, while the remainder (5/14) function via interactions with RNA-binding proteins. CSM-circRNA dysregulation affects key CSC traits, confirming their role in modulating cancer stemness. Among the fifteen CSM-circRNA-regulated proteins identified, ten are (post-)transcriptional or (post-)translational regulators, and five are signaling or structural proteins. The CRC CSM-circRNA-regulated proteins are dysregulated across multiple cancer types besides CRC, influencing key biochemical and signaling pathways. We propose that CSM-circRNAs constitute a novel class of post-transcriptional regulators that broadly activate cancer stem cells and driving malignant progression, highlighting their diagnostic and therapeutic potentials. It is anticipated that CSM-circRNAs in other cancers, and other functional circRNA categories across diseases, will be similarly categorized, providing systematic frameworks for organizing the rapidly expanding circRNA literature.
Insights
Circular RNAs (circRNAs) regulate cancer stemness. This review identifies fourteen cancer stemness-modulating circRNAs (CSM-circRNAs) in colorectal cancer, highlighting their diagnostic and therapeutic potential.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Cancer stem cells (CSCs) drive tumor growth and recurrence.
- Circular RNAs (circRNAs) are increasingly recognized as key regulators of cancer stemness.
Purpose of the Study:
- To systematically review and define cancer stemness-modulating circRNAs (CSM-circRNAs) in colorectal cancer (CRC).
- To elucidate the mechanisms and functional roles of CSM-circRNAs in CRC progression.
Main Methods:
- Systematic literature review with stringent selection criteria.
- Validation of identified CSM-circRNAs using spheroid formation assays and stemness marker expression.
- Analysis of regulatory mechanisms (miRNA sponging, RNA-binding protein interactions) and downstream protein targets.
Main Results:
- Fourteen dysregulated CSM-circRNAs were identified in CRC, with most upregulated and many showing pan-cancer dysregulation.
- CSM-circRNAs modulate key CSC traits, primarily through miRNA sponging or RNA-binding protein interactions.
- Dysregulated CSM-circRNA-regulated proteins impact key signaling pathways across multiple cancer types.
Conclusions:
- CSM-circRNAs represent a novel class of post-transcriptional regulators that promote cancer stemness and malignant progression in CRC.
- CSM-circRNAs hold significant diagnostic and therapeutic potential for colorectal cancer.
- A systematic framework for categorizing functional circRNAs can aid research in various diseases.
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