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Mapping the Binding Site of an Aptamer on ATP Using MicroScale Thermophoresis
Published on: January 7, 2017
Aptamer-mediated targeted approach to disrupt oncogenic HSP90α
Jaskirat Kaur1, Sakshi Nautiyal1, Ipsita Roy1
1Department of Biotechnology, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, Punjab, 160062, India.
Abstract:
Among the cytosolic isoforms of HSP90, HSP90α (the inducible isoform) has been observed to be significantly upregulated in both cancer and stress conditions. HSP90α client proteins are required for the proliferation of cancer cells. The inability of HSP90 inhibitors to recognize and bind to specific isoforms of the protein is a major reason for their failure to reach the clinic. In this work, RNA aptamers were selected from a diverse, randomized oligonucleotide library. These were able to bind to HSP90α with significantly higher affinity than HSP90β and inhibit ATPase activity. The two isoforms differ in just two amino acids in their ATP-binding domains. The presence of the aptamers led to decrease in migration of MCF7 breast cancer cells. Significant reduction in the expression of an HSP90α- but not HSP90β-specific client protein was also observed. Aptamers showed significant lethality only on cancer cells, but not on healthy cells. Cell death occurred by apoptosis. Unlike traditional anti-cancer drugs which are inherently toxic and cannot be administered regularly, aptamers offer a promising alternative for prevention of metastasis.
Insights
Novel RNA aptamers selectively target and inhibit HSP90α, a protein crucial for cancer cell proliferation. These aptamers demonstrate anti-cancer effects by inducing apoptosis and reducing metastasis without harming healthy cells.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- Cytosolic Heat Shock Protein 90 (HSP90) has two main isoforms: HSP90α and HSP90β.
- HSP90α is significantly upregulated in cancer and stress conditions, supporting cancer cell proliferation.
- Current HSP90 inhibitors lack isoform specificity, hindering clinical application.
Purpose of the Study:
- To develop RNA aptamers that selectively bind and inhibit HSP90α.
- To investigate the anti-cancer potential of these aptamers.
- To assess the therapeutic implications of isoform-specific HSP90α inhibition.
Main Methods:
- Selection of RNA aptamers from a randomized oligonucleotide library.
- Affinity-based binding assays to compare aptamer binding to HSP90α and HSP90β.
- Assays to measure ATPase activity inhibition.
- Cell migration assays using MCF7 breast cancer cells.
- Western blot analysis to assess client protein expression.
- Cell viability assays on cancer and healthy cells.
- Apoptosis assays.
Main Results:
- Selected RNA aptamers exhibited significantly higher affinity for HSP90α compared to HSP90β.
- Aptamers inhibited HSP90α ATPase activity.
- Aptamer treatment decreased MCF7 breast cancer cell migration.
- Expression of HSP90α-specific client proteins was significantly reduced.
- Aptamers induced significant lethality in cancer cells but not in healthy cells, via apoptosis.
- Apoptosis was confirmed as the mechanism of cell death.
Conclusions:
- RNA aptamers can be specifically selected to target HSP90α.
- These aptamers inhibit HSP90α function, leading to reduced cancer cell proliferation and migration.
- Aptamers demonstrate selective toxicity towards cancer cells, offering a potential therapeutic strategy.
- Aptamers represent a promising alternative to traditional anti-cancer drugs for metastasis prevention.
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