Machine learning mortality prediction model for cyclosporine therapy in pediatric aplastic anemia
Xianhao Wen1, Li Xiao2, Danni Li1
1Department of Hematology and Oncology, National Clinical Research Center for Children and Adolescents' Health and Diseases, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Child Rare Diseases in Infection and Immunity, Children's Hospital of Chongqing Medical University, Chongqing, China.
Insights
A new machine learning model predicts mortality risk in children with aplastic anemia treated with cyclosporine. The CatBoost model, using factors like reticulocyte count, improves risk stratification for personalized treatment strategies.
Area of Science:
- Pediatric Hematology
- Machine Learning in Medicine
- Oncology
Background:
- Outcomes for children with aplastic anemia (AA) receiving cyclosporine monotherapy show significant mortality risk variation.
- Optimizing treatment strategies requires accurate prediction of mortality risk.
Purpose of the Study:
- To develop and validate a prognostic model for predicting mortality risk in pediatric patients with acquired AA undergoing cyclosporine treatment.
- To enable risk-stratified treatment approaches for improved patient outcomes.
Main Methods:
- Retrospective cohort study of children with acquired AA treated with cyclosporine.
- Development and comparison of ten machine learning models, including CatBoost, with hyperparameter optimization.
- Model performance evaluated using AUC, accuracy, precision, recall, F1 score, Brier score, and calibration curves.
- SHapley Additive exPlanations (SHAP) used for model interpretability and feature importance analysis.
Main Results:
- The CatBoost model demonstrated strong predictive performance with an AUC of 0.834 (training) and 0.826 (validation).
- Key predictors identified by LASSO regression included reticulocyte count (RC), platelet count (PLT), disease subtype, total bilirubin (TB), and bone marrow myeloid proportion.
- SHAP analysis highlighted lower reticulocyte counts as a significant indicator of higher mortality risk.
Conclusions:
- The CatBoost model offers a robust and transparent tool for predicting mortality risk in pediatric AA patients post-cyclosporine treatment.
- This model can aid in clinical decision-making for stratifying patients and personalizing treatment strategies.
- Adherence to TRIPOD+AI guidelines ensures the methodological rigor of the developed prognostic model.
Abstract:
The outcomes of children with aplastic anemia receiving cyclosporine monotherapy vary significantly in terms of mortality risk; therefore, a prognostic model for predicting mortality risk was constructed to optimize risk-stratified treatment strategies. This retrospective cohort study included children with acquired AA receiving cyclosporine-based immunosuppression, stratified by disease severity (vSAA/SAA/NSAA) and randomly split into training (70%) and validation (30%) cohorts. Ten machine learning models were developed; hyperparameters were optimized via grid search with 10-fold cross-validation exclusively within the training cohort to prevent data leakage. Model performance was evaluated using area under the ROC curve (AUC), accuracy, recall, specificity, precision, F1 score, and Brier score. Decision curve analysis (DCA) quantified clinical net benefit. The calibration curve was used to evaluate the reliability of the predicted probabilities. The SHapley Additive exPlanations (SHAP) framework was used to interpret feature contributions and ensure model transparency. Least absolute shrinkage and selection operator (LASSO) regression on the training cohort identified 5 predictors: reticulocyte count (RC), platelet count (PLT), disease subtype (vSAA/SAA/NSAA), total bilirubin (TB), and bone marrow myeloid proportion. The CatBoost model achieved the highest performance: AUC 0.834 (95% CI: 0.774-0.895) in training and 0.826 (95% CI: 0.743-0.910) in validation, with acceptable calibration (Brier score: 0.206 in training cohort, 0.207 in validation cohort). SHAP analysis confirmed RC as the top contributor, with lower RC values associated with higher predicted mortality risk. The CatBoost model demonstrates robust performance and transparency for predicting mortality risk in children with AA after cyclosporine treatment. Adherence to TRIPOD + AI guidelines ensures methodological rigor, supporting its potential as a clinical decision tool to stratify patients into distinct mortality risk groups and optimize individualized treatment strategies.
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