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Updated: Feb 1, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Identification of MKRN1 as a key modulator of the p53-MDM2 feedback loop
Tatsuya Shimada1, Takuya Noguchi2,3, Ryuto Komatsu1
1Laboratory of Health Chemistry, Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai, Japan.
Abstract:
The p53-murine double minute 2 (MDM2) feedback loop plays a central role in tumor suppression by optimizing p53-dependent DNA damage responses (DDRs), though it has been suggested that factors other than MDM2 are also involved in the regulation of the p53-MDM2 feedback loop. We identified makorin ring finger protein 1 (MKRN1) as a novel ubiquitin E3 ligase that ubiquitinates MDM2 and thereby promotes the p53 activation. As previously demonstrated, MKRN1 ubiquitinates and degrades p53 under steady-state conditions. However, when DNA damage occurs, MKRN1 switches its substrate to MDM2. Thereafter, MKRN1 promotes the stabilization and activation of p53 through proteasomal degradation of MDM2, which contributes to the elimination of DNA-damaged cells. Moreover, we found that the switch in the substrate of MKRN1 was determined by the NAD(+)-dependent protein deacetylase Sirtuin-1 (SIRT1). Thus, our results suggest that MKRN1 working in conjunction with SIRT1 is a master regulator of the p53-MDM2 feedback loop modulated by crosstalk between ubiquitination and acetylation.
Insights
Makorin ring finger protein 1 (MKRN1) acts as a novel E3 ligase, targeting MDM2 for degradation to activate p53 during DNA damage. This MKRN1-SIRT1 pathway regulates the p53-MDM2 feedback loop, crucial for tumor suppression.
Area of Science:
- Molecular Biology
- Cancer Research
- Cellular Signaling
Background:
- The p53-murine double minute 2 (MDM2) feedback loop is critical for tumor suppression and DNA damage responses (DDRs).
- Regulation of the p53-MDM2 loop involves complex mechanisms beyond MDM2 itself.
Purpose of the Study:
- To identify novel regulators of the p53-MDM2 feedback loop.
- To elucidate the role of makorin ring finger protein 1 (MKRN1) in p53 regulation and DDRs.
Main Methods:
- Ubiquitination assays to determine MKRN1's targets.
- Western blotting to assess protein levels of p53 and MDM2.
- Analysis of MKRN1's substrate switching mechanism involving Sirtuin-1 (SIRT1).
Main Results:
- MKRN1 was identified as a ubiquitin E3 ligase that ubiquitinates MDM2, promoting p53 activation.
- Under DNA damage conditions, MKRN1 switches from ubiquitinating p53 to ubiquitinating MDM2, leading to MDM2 degradation and p53 stabilization.
- The substrate switch of MKRN1 is regulated by SIRT1, linking ubiquitination and acetylation pathways.
Conclusions:
- MKRN1 acts as a key regulator of the p53-MDM2 feedback loop by targeting MDM2 for degradation upon DNA damage.
- The interplay between MKRN1 and SIRT1 modulates p53 activation through a novel ubiquitination-acetylation crosstalk mechanism.
- This regulatory axis contributes to the elimination of DNA-damaged cells, highlighting its significance in tumor suppression.
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