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A High-Throughput Multiplexed Screening for Type 1 Diabetes, Celiac Diseases, and COVID-19
Published on: July 5, 2022
Network Meta-Analysis on the Mechanisms underlying Type 2 Diabetes Augmentation of COVID-19 Pathologies
Ryan J Kim1,2, Mohammed As Khan3, Maryam Khan4
1Institute of NeuroImmune Pharmacology (I-NIP), Seton Hall University, 400 S Orange Ave, NJ 07079, USA.
Abstract:
Coronavirus disease-2019 (COVID-19) is caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection. SARS-CoV-2 virus is internalized by surface receptors, e.g., angiotensin-converting enzyme-2 (ACE2). Clinical reports suggest that non-insulin dependent diabetes mellitus (DM-II) may enhance COVID-19. This bioinformatics study investigated how DM-II augments COVID-19 complications through molecular interactions with cytokines/chemokines, using QIAGEN Ingenuity Pathway Analysis (IPA) and CLC Genomics Workbench 22 (CLCG-22). "(Iβ-CG) RNA-sequencing of (Iβ-CG) through CLCG-22 (SRA SRP287500) were analyzed to identify differential expression of (Iβ-CG). IPA's QIAGEN Knowledge Base (QKB) was also used to retrieve 88 total molecules shared between DM-II and SARS-CoV-2 infection to characterize and identify Iβ-CG, due to close association with DM-II. Molecules directly associated with ACE2 and cytokines/chemokines were also identified for their association with SARS-CoV-2 infection. Using IPA, it was found that 3 Iβ-CG (SCL2A2, PPARγ, and CPLX8) are common in both diseases that were downregulated by DM-II. Their downregulation occurred due to increased activity of cytokines/chemokines and ACE2. Collectively, this network meta-analysis demonstrated that interaction of SARS-CoV-2 with ACE2 could primarily induce endothelial cell dysfunction. Identification of common molecules and signaling pathways between DM-II and SARS-CoV-2 infection in this study may lead to further discovery of therapeutic measures to simultaneously combat both diseases.
Insights
This study reveals how type 2 diabetes (DM-II) worsens COVID-19 by affecting shared molecules like ACE2 and cytokines. Understanding these molecular links may help develop treatments for both conditions.
Area of Science:
- Bioinformatics
- Molecular Biology
- Immunology
Background:
- Coronavirus disease-2019 (COVID-19), caused by SARS-CoV-2, involves ACE2 receptor interaction.
- Non-insulin dependent diabetes mellitus (DM-II) is suspected to exacerbate COVID-19 severity.
- Understanding shared molecular pathways is crucial for co-managing these diseases.
Purpose of the Study:
- To investigate the molecular mechanisms by which DM-II augments COVID-19 complications.
- To identify shared molecules and signaling pathways between DM-II and SARS-CoV-2 infection.
- To explore potential therapeutic targets for simultaneous treatment of both conditions.
Main Methods:
- Utilized QIAGEN Ingenuity Pathway Analysis (IPA) and CLC Genomics Workbench 22 (CLCG-22).
- Analyzed RNA-sequencing data (SRA SRP287500) for differential gene expression.
- Retrieved and analyzed molecules shared between DM-II and SARS-CoV-2 infection using IPA's QIAGEN Knowledge Base (QKB).
Main Results:
- Identified three common molecules (SCL2A2, PPARγ, CPLX8) downregulated by DM-II in both diseases.
- Found that downregulation of these molecules is linked to increased activity of cytokines/chemokines and ACE2.
- Demonstrated that SARS-CoV-2 interaction with ACE2 can induce endothelial cell dysfunction.
Conclusions:
- Shared molecular pathways and common molecules exist between DM-II and SARS-CoV-2 infection.
- The interaction network highlights the role of ACE2 and cytokines/chemokines in disease exacerbation.
- This research may pave the way for novel therapeutic strategies targeting both DM-II and COVID-19.
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