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A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
Complete mitochondrial genome of Echinorhynchus gadi (Acanthocephala, Echinorhynchida) and its phylogenetic
FeiMing Chen1,2, JinWei Gao1,2, Yu Huang2
1Hunan Fisheries Research Institute and Aquatic Products Seed Stock Station, Changsha, Hunan, China Guangdong Ocean University Zhanjiang China https://ror.org/0462wa640.
Abstract:
The Echinorhynchidae has a long research history, but its mitochondrial genome evolution remains poorly understood, hindering phylogenetic resolution. In this study, we report the first complete mitochondrial genome of the genus Echinorhynchus, obtained from its type species, Echinorhynchus gadi. The circular mitogenome was 17,696 bp in length and contained 39 genes: 12 protein-coding genes (lacking atp8), two ribosomal RNA genes, and 25 transfer RNA genes, including two extra copies of trnW and one extra copy of trnV. Five non-coding regions were identified; the major non-coding region contained tandem repeats and pseudogene fragments, consistent with a tandem duplication and random loss mechanism. Phylogenetic analysis based on the concatenated amino acid sequences of the 12 protein-coding genes placed E. gadi and E. truttae in a well-supported monophyletic clade representing the genus Echinorhynchus. This clade was sister to Aspersentis megarhynchus, supporting a close relationship between Echinorhynchidae and Heteracanthocephalidae. Because the published E. truttae mitogenome is incomplete, this study fills a critical genomic gap and provides a valuable molecular resource for future taxonomic, systematic, and evolutionary studies of Acanthocephala.
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