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Updated: Feb 4, 2026

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data
Published on: September 25, 2021
BOBM: an adaptive deep learning framework for extended-window sepsis prediction with cross-institutional
Wanxuan Li1,2, Kai Xiao1, Boyuan Gu3,4
1School of Medicine, South China University of Technology, Guangzhou, China.
Introduction:
Sepsis, a life-threatening and costly condition, necessitates early detection for effective management. However, diagnostic and therapeutic delays are common. Furthermore, sepsis complexity and dynamics challenge existing early warning systems, impeding timely intervention.
Methods:
In this study, we introduce the Bayes-Optimized Boosting-Mamba Tab Model (BOBM), a novel deep learning-based algorithm that incorporates a bidirectional optimization learning mechanism within an ensemble framework. We designed dynamic agent models to enhance computational efficiency and adaptability across diverse clinical scenarios. Additionally, the model architecture was optimized for different temporal phases to enable a more precise estimation of the timing and progression of sepsis risk. To improve interpretability, we implemented SHapley Additive exPlanations value analysis, providing clinicians with actionable insights into potential patterns of sepsis progression.
Results:
The experimental evaluation demonstrated that our model attained the highest AUC (AUC: 0.86-0.95) in the MIMIC-IV dataset across different temporal windows prior to sepsis onset, confirming its adaptability and robust generalizability across various prediction timeframes. Furthermore, the model demonstrated superior performance (AUC: 0.978-0.982) when validated on two independent large-scale external datasets.
Conclusion:
In contrast to traditional prediction approaches, our model extends the potential intervention timeframe significantly, while incorporating dynamic monitoring capabilities spanning the 7- to 28-day window before clinical suspicion, thereby establishing a foundation for regional sepsis surveillance systems.
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