Integration of network toxicology and bioinformatics identifies key targets and pathways in 1,3-butadiene-induced

Zhengbo Huang1, Min Ou2, Guoshun Li3

  • 1School of Nursing, Binzhou Medical University, Yantai, Shandong, China.

Insights

1,3-Butadiene (1,3-BD) causes kidney damage through unclear molecular pathways. This study identifies key targets like BCL2 and CASP3, revealing their role in both 1,3-BD nephrotoxicity and renal cancer progression.

Area of Science:

  • Environmental Toxicology
  • Bioinformatics
  • Molecular Biology

Background:

  • 1,3-Butadiene (1,3-BD) is a Group 1 carcinogen linked to various health issues.
  • The molecular mechanisms of 1,3-BD-induced nephrotoxicity are not well understood.
  • Understanding these mechanisms is crucial for developing effective interventions.

Purpose of the Study:

  • To elucidate the molecular targets and pathways involved in 1,3-BD-induced nephrotoxicity.
  • To investigate the potential role of identified targets in renal cancer.
  • To provide insights into the dual role of specific genes in toxicity and cancer.

Main Methods:

  • Network toxicology and bioinformatics analyses were employed.
  • Key molecular targets (BCL2, CASP3, MMP9, SIRT1, TNF) were identified.
  • Molecular docking, simulations, CETSA, and TCGA database analysis were utilized for validation and correlation.

Main Results:

  • BCL2, CASP3, MMP9, SIRT1, and TNF were identified as central mediators of renal toxicity.
  • Pathway analyses indicated involvement of oxidative stress, signaling, and apoptosis.
  • These targets demonstrated diagnostic and prognostic significance in renal cancer.

Conclusions:

  • The identified targets (BCL2, CASP3, MMP9, SIRT1, TNF) are crucial in 1,3-BD nephrotoxicity.
  • These genes may also contribute to renal cancer progression, suggesting a shared molecular basis.
  • Findings offer novel insights into 1,3-BD renal injury mechanisms and potential therapeutic targets.

Related Concept Videos

π Molecular Orbitals of 1,3-Butadiene01:24

π Molecular Orbitals of 1,3-Butadiene

Conjugated dienes have lower heats of hydrogenation than cumulated and isolated dienes, making them more stable. The enhanced stabilization of conjugated systems can be understood from their π molecular orbitals.
The simplest conjugated diene is 1,3-butadiene: a four-carbon system where each carbon is sp2-hybridized and has an unhybridized p orbital that contains an unpaired electron. According to molecular orbital theory, atomic orbitals combine to form molecular orbitals such that the number...
11.8K
Electrophilic 1,2- and 1,4-Addition of HX to 1,3-Butadiene01:17

Electrophilic 1,2- and 1,4-Addition of HX to 1,3-Butadiene

The electrophilic addition of hydrogen halides such as HBr to alkenes and nonconjugated dienes gives a single product as per Markovnikov’s rule.
8.2K
Electrophilic 1,2- and 1,4-Addition of X2 to 1,3-Butadiene01:14

Electrophilic 1,2- and 1,4-Addition of X2 to 1,3-Butadiene

Electrophilic addition of halogens to alkenes proceeds via a cyclic halonium ion to form a 1,2-dihalide or a vicinal dihalide.
3.5K
Electrophilic Addition of HX to 1,3-Butadiene: Thermodynamic vs Kinetic Control01:23

Electrophilic Addition of HX to 1,3-Butadiene: Thermodynamic vs Kinetic Control

The addition of a hydrogen halide to 1,3-butadiene gives a mixture of 1,2- and 1,4-adducts. Since more substituted alkenes are more stable, the 1,4-adduct is expected to be the major product. However, the product distribution is strongly influenced by temperature; low temperature favors the 1,2-adduct, whereas the 1,4-adduct is predominant at high temperature.
3.8K
Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.5K
Key Techniques in Microbiology01:19

Key Techniques in Microbiology

Aseptic techniques prevent contamination, ensure experimental accuracy, and protect researchers and microbial cultures. These techniques are essential in clinical, industrial, and research settings where sterility is required.Maintaining Sterility in Laboratory PracticesScientists maintain sterility by sterilizing tools with heat or chemicals, disinfecting work surfaces, and handling cultures in controlled environments. Working near an open flame or within a laminar flow hood reduces the risk...
2.4K