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Integration of network toxicology and bioinformatics identifies key targets and pathways in 1,3-butadiene-induced
Zhengbo Huang1, Min Ou2, Guoshun Li3
1School of Nursing, Binzhou Medical University, Yantai, Shandong, China.
Abstract:
1,3-Butadiene (1,3-BD) is a gaseous environmental pollutant classified as a Group 1 carcinogen by the International Agency for Research on Cancer (IARC). While its carcinogenic effects are well-known, the molecular mechanisms underlying its nephrotoxicity remain unclear. This study utilizes network toxicology and bioinformatics to explore the targets and mechanisms of 1,3-BD-induced nephrotoxicity. Key targets such as BCL2, CASP3, MMP9, SIRT1, and TNF were identified as central mediators of renal toxicity. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses highlighted processes related to oxidative stress, signaling, and apoptosis. Molecular docking, molecular dynamics simulations, and CETSA further confirmed the interactions between 1,3-BD and these targets. Additionally, using the TCGA database, we found that these targets have diagnostic and prognostic significance in renal cancer. Our findings suggest that BCL2, CASP3, MMP9, SIRT1, and TNF may play crucial roles in both nephrotoxicity and renal cancer progression, offering new insights into the molecular mechanisms of 1,3-BD-induced renal injury and potential intervention targets.
Insights
1,3-Butadiene (1,3-BD) causes kidney damage through unclear molecular pathways. This study identifies key targets like BCL2 and CASP3, revealing their role in both 1,3-BD nephrotoxicity and renal cancer progression.
Area of Science:
- Environmental Toxicology
- Bioinformatics
- Molecular Biology
Background:
- 1,3-Butadiene (1,3-BD) is a Group 1 carcinogen linked to various health issues.
- The molecular mechanisms of 1,3-BD-induced nephrotoxicity are not well understood.
- Understanding these mechanisms is crucial for developing effective interventions.
Purpose of the Study:
- To elucidate the molecular targets and pathways involved in 1,3-BD-induced nephrotoxicity.
- To investigate the potential role of identified targets in renal cancer.
- To provide insights into the dual role of specific genes in toxicity and cancer.
Main Methods:
- Network toxicology and bioinformatics analyses were employed.
- Key molecular targets (BCL2, CASP3, MMP9, SIRT1, TNF) were identified.
- Molecular docking, simulations, CETSA, and TCGA database analysis were utilized for validation and correlation.
Main Results:
- BCL2, CASP3, MMP9, SIRT1, and TNF were identified as central mediators of renal toxicity.
- Pathway analyses indicated involvement of oxidative stress, signaling, and apoptosis.
- These targets demonstrated diagnostic and prognostic significance in renal cancer.
Conclusions:
- The identified targets (BCL2, CASP3, MMP9, SIRT1, TNF) are crucial in 1,3-BD nephrotoxicity.
- These genes may also contribute to renal cancer progression, suggesting a shared molecular basis.
- Findings offer novel insights into 1,3-BD renal injury mechanisms and potential therapeutic targets.
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