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Updated: Feb 6, 2026

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
[Hypogonadotropic hypogonadism due to pathogenic variants in the POLR3B gene]
O A Malievskiy1, R I Malievskaya1, E V Saifullina1
1Bashkir State Medical University.
Abstract:
Congenital hypogonadotropic hypogonadism (СНH) is a group of diseases caused by impaired synthesis or secretion of gonadotropin-releasing hormone (GnRH) and gonadotropin hormones. At present, more than twenty genes involved in the development of СНН have been described. In the structure of HGH, the most common forms of the disease are caused by pathogenic variants in genes involved in the ontogenesis, migration and survival of GnRH neurons, whereas pathology of genes involved in the action/transmission of GnRH signals in normally developed GnRH neurons is less common. This article describes a rare variant of СНН as a result of pathogenic variants in the POLR3B gene, occurring in 1.1% of cases of СНН, which is a component of hypomyelinating leukodystrophy 4H and includes hypomyelination, CHН, hypodontia. Identification of the genetic nature of the disease in this patient made it possible not only to establish the cause of CНН, but also to diagnose comorbid conditions.
Insights
Congenital hypogonadotropic hypogonadism (CHH) can stem from rare POLR3B gene variants. This genetic cause also links to hypomyelination and hypodontia, highlighting a complex genetic disorder.
Area of Science:
- Genetics
- Endocrinology
- Neurology
Background:
- Congenital hypogonadotropic hypogonadism (CHH) results from impaired gonadotropin-releasing hormone (GnRH) synthesis or secretion.
- Over twenty genes are linked to CHH, with most cases involving GnRH neuron development, migration, or survival.
- Pathologies in GnRH signal action/transmission are less common causes of CHH.
Purpose of the Study:
- To describe a rare form of CHH caused by pathogenic variants in the POLR3B gene.
- To investigate the genetic basis of CHH and associated comorbid conditions.
Main Methods:
- Genetic analysis to identify pathogenic variants.
- Clinical evaluation for associated conditions.
Main Results:
- Identified a rare variant of CHH (1.1% of cases) due to POLR3B gene pathogenic variants.
- This variant is associated with hypomyelinating leukodystrophy 4H, encompassing hypomyelination and hypodontia.
- Genetic identification confirmed the cause of CHH and diagnosed comorbid conditions.
Conclusions:
- Pathogenic variants in the POLR3B gene represent a rare but significant cause of CHH.
- POLR3B-related CHH is part of a broader syndrome including hypomyelination and hypodontia.
- Genetic diagnosis is crucial for understanding CHH etiology and identifying associated disorders.
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