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Updated: Feb 6, 2026

Organoid-Derived Epithelial Monolayer: A Clinically Relevant In Vitro Model for Intestinal Barrier Function
Published on: July 29, 2021
Optimising the induction of inflammation within preterm infant-derived intestinal epithelial organoids
Jonathan A Chapman1, Andrew M Frey2, Maria Emilia Dueñas2,3
1Newcastle University, Translational and Clinical Research Institute, Newcastle upon Tyne, UK.
Insights
This study optimized an inflammation model using preterm infant intestinal organoids. The model effectively simulates gut inflammation, aiding research into microbiome-host interactions in preterm infants.
Area of Science:
- Gastroenterology
- Microbiology
- Developmental Biology
Background:
- Preterm infants (<32 weeks gestation) exhibit gut microbial dysbiosis and inflammation.
- Preterm infant-derived intestinal organoids (PIOs) offer a promising model for studying gut microbiome-host interactions.
- Understanding inflammatory responses in the preterm gut is crucial for improving infant health outcomes.
Purpose of the Study:
- To optimize an in vitro inflammation model using PIOs.
- To investigate host-microbe interactions and inflammatory pathways in the preterm gut.
- To establish a framework for studying gut inflammation in preterm infants.
Main Methods:
- Developed an anaerobic co-culture system for PIO monolayers, mimicking intestinal oxygen gradients.
- Tested various inflammatory stimuli, including pathobionts, lipopolysaccharide (LPS), and flagellin.
- Optimized stimulus application (apical LPS, basolateral flagellin) and incubation time (3 hours) for maximal response.
Main Results:
- A combination of apical LPS and basolateral flagellin induced a robust inflammatory response in PIOs.
- Key indicators included enhanced pro-inflammatory cytokine secretion and chemokine-driven immune cell recruitment.
- Observed activation of TNFα and IL17C pathways, a shift from NF-κB to AP-1 signaling, and tissue remodeling.
Conclusions:
- The optimized PIO inflammation model provides a reliable platform for studying preterm infant gut inflammation.
- This model facilitates research into the complex interplay between the microbiome and host in health and disease.
- The findings offer a framework for future studies on preterm infant gut pathophysiology and therapeutic interventions.
Abstract:
Preterm infants born <32 weeks gestation have abnormal microbial colonisation and dysregulated inflammation within the gut. Preterm infant-derived intestinal organoids (PIOs) represent a valuable model for investigating gut microbiome-host interactions and inflammatory responses. We optimised an inflammation model in PIO monolayers incubated within an anaerobic co-culture system that recreates the physiological oxygen gradient of the intestinal epithelium. We trialled multiple stimuli, including live and heat-killed pathobiont consortia, lipopolysaccharide (LPS) and flagellin. We found that a combination of apical LPS and basolateral flagellin, incubated for 3 h, elicited the most robust response. This was characterised by enhanced pro-inflammatory cytokine secretion, the potential for chemokine-driven immune recruitment, TNFα and IL17C pathway signalling, shifts from NF-κB to AP-1-mediated responses, and signs of tissue remodelling. This provides a framework for appropriate study design to disentangle the impacts of microbiome-host interactions in health and disease using intestinal organoids.
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