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Published on: January 7, 2019
Prevalence and Actionability of MTAP Loss in Oncogene-Driven Lung Cancer
Takashi Sakai1,2, Zofia Piotrowska1,2, Charlotte I Wang2,3
1Mass General Brigham Cancer Institute and Department of Medicine, Massachusetts General Hospital.
Background:
Methylthioadenosine phosphorylase (MTAP) loss co-occurs with actionable genomic alterations in non-small cell lung cancer (NSCLC) and creates vulnerability to protein arginine methyltransferase 5 (PRMT5) inhibition. Estimates of prevalence of MTAP loss rely on next-generation sequencing which can underestimate copy losses. Moreover, the activity of PRMT5 inhibitors in oncogene-driven NSCLC is not well established.
Methods:
We assessed MTAP expression by immunohistochemistry (IHC) in 243 NSCLCs (n=132 early stage, n=111 metastatic), including 33 specimens with paired lymph nodes. Antiproliferative activity of PRMT5 inhibitor monotherapy and in combination with tyrosine kinase inhibitors (TKIs) was evaluated in MTAP-deleted NSCLC cell lines harboring EGFR or KRAS mutations or ALK rearrangements.
Results:
Among 243 NSCLC specimens from 240 patients (72% with driver alterations, 90% adenocarcinoma), MTAP loss was identified in 43 (18%) specimens from 40 (17%) patients, including 18 (14%) early-stage and 22 (20%) metastatic tumors. MTAP loss occurred in 24% of stage 4 driver-positive NSCLCs versus 14% of driver-negative tumors (p=0.314). Twenty (61%) lung-nodal pairs demonstrated concordance; eight cases only exhibited decreased MTAP expression in nodes. Variable sensitivity to PRMT5 inhibitors was observed in 22 MTAP-deleted NSCLC cell lines (9 EGFR-mutant, 7 KRAS-mutant, 6 ALK-rearranged), with responses seen in TKI-sensitive and TKI-resistant lines. SDMA (symmetric dimethylarginine) expression did not predict PRMT5 inhibitor sensitivity. TKI + PRMT5 inhibitor combos had greater activity than monotherapy.
Conclusions:
MTAP loss occurs in 1-in-5 oncogene-driven metastatic NSCLCs. PRMT5 inhibitor activity is independent of TKI exposure, driver alteration, and SDMA expression and enhanced by addition of TKI. These findings support clinical evaluation of PRMT5 inhibitor + TKI combinations for advanced NSCLC.
Insights
Methylthioadenosine phosphorylase (MTAP) loss is common in non-small cell lung cancer (NSCLC) and indicates vulnerability to PRMT5 inhibitors. Combining PRMT5 inhibitors with TKIs shows promise for treating advanced NSCLC.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Methylthioadenosine phosphorylase (MTAP) loss is observed with actionable genomic alterations in non-small cell lung cancer (NSCLC).
- MTAP loss creates a vulnerability to protein arginine methyltransferase 5 (PRMT5) inhibition.
- Current estimates of MTAP loss prevalence may underestimate its occurrence, and PRMT5 inhibitor efficacy in oncogene-driven NSCLC requires further investigation.
Purpose of the Study:
- To assess the prevalence of MTAP loss in NSCLC using immunohistochemistry (IHC).
- To evaluate the antiproliferative activity of PRMT5 inhibitors in MTAP-deleted NSCLC cell lines with common driver alterations.
- To determine the efficacy of combining PRMT5 inhibitors with tyrosine kinase inhibitors (TKIs).
Main Methods:
- MTAP expression was assessed by IHC in 243 NSCLC specimens.
- Antiproliferative activity of PRMT5 inhibitor monotherapy and combination therapy with TKIs was evaluated in 22 MTAP-deleted NSCLC cell lines harboring EGFR, KRAS, or ALK alterations.
Main Results:
- MTAP loss was identified in 18% of NSCLC specimens, including 20% of metastatic tumors.
- PRMT5 inhibitor sensitivity varied among MTAP-deleted NSCLC cell lines, irrespective of TKI sensitivity or specific driver alteration.
- Combination therapy with TKIs demonstrated enhanced activity compared to PRMT5 inhibitor monotherapy.
Conclusions:
- MTAP loss affects approximately 1 in 5 metastatic NSCLCs with oncogenic drivers.
- PRMT5 inhibitor efficacy is independent of TKI exposure, driver alteration, and SDMA expression.
- PRMT5 inhibitor and TKI combination therapy warrants clinical evaluation for advanced NSCLC.
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