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Structure-Guided Synthetic Peptide Targeting Nucleolus and Neural Progenitor Protein Nuclear Import Impairs Ribosome
Abhishek Kumar1, Suvam Saha2, Yogendra Pratap Mathuria3
1Research and Development Division, Accelgen Bharat Bioinnovations, Kolkata, India.
Chembiochem : a European Journal of Chemical Biology
|February 7, 2026
Summary
We identified a key site (R94) in the NEPRO protein
Area of Science:
- Molecular Biology
- Cancer Research
- Biochemistry
Background:
- Nucleolus and neural progenitor protein (NEPRO) is crucial for 40S ribosomal subunit maturation, supporting cancer cell proliferation.
- NEPRO's function is vital for meeting the high translational demands of rapidly dividing cancer cells.
Purpose of the Study:
- To investigate the nuclear localization signal (NLS) of NEPRO and its interaction with importin-α1.
- To develop a peptide-based inhibitor targeting NEPRO for cancer therapy.
Main Methods:
- Identification and characterization of NEPRO's bipartite NLS (aa 74-96).
- Analysis of a disease-associated mutation (R94C) and its effect on NEPRO nuclear import and importin-α1 binding.
- Design and synthesis of a hexapeptide inhibitor (AWPTPD) targeting the NEPRO NLS.
- In vitro and cellular assays to evaluate the peptide's efficacy in inhibiting NEPRO function and cancer cell growth.
Main Results:
- A disease mutation (R94C) in NEPRO's NLS disrupts nuclear localization and importin-α1 binding.
- The synthetic peptide AWPTPD specifically binds wild-type NEPRO and inhibits its nuclear import.
- Peptide treatment reduces polysome abundance, collagen secretion, and cancer cell clonogenicity, inducing cell-cycle arrest and senescence.
Conclusions:
- NEPRO's R94 residue is a critical target within its NLS for inhibiting nuclear import.
- A rationally designed peptide inhibitor can effectively disrupt ribosome biogenesis and suppress cancer cell proliferation.
- This peptide-based strategy offers a novel therapeutic approach for targeting cancer growth.
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