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Updated: Feb 10, 2026

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Carriage of multidrug-resistant bacteria and encoding genes among Vietnamese children with acute diarrhea
Xuan Duong Tran1,2,3, Thi Loi Dao3, Ndiaw Goumballa1,2
1Aix Marseille Univ, AP-HM, SSA, RITMES, Marseille, France.
Insights
Multidrug-resistant bacteria and resistance genes are common in children with acute diarrhea, indicating prior exposure. This highlights the need for better antimicrobial stewardship and infection control to combat rising resistance.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- The increasing prevalence of multidrug-resistant (MDR) bacteria poses a significant global health threat.
- Children, particularly those hospitalized with acute diarrhea, are a vulnerable population for carrying MDR organisms.
Purpose of the Study:
- To determine the prevalence of MDR bacterial carriage and specific resistance-encoding genes in young children hospitalized with acute diarrhea.
- To investigate the presence of colistin resistance genes in stool samples from these children.
Main Methods:
- A prospective study involving 451 children under 5 years old hospitalized with acute diarrhea.
- Stool sample analysis for MDR bacteria identification, antimicrobial susceptibility testing, and real-time PCR for resistance genes (including colistin resistance genes).
Main Results:
- 33.2% of children carried MDR bacteria and/or colistin resistance genes.
- MDR pathogens were found in 17.6% of children, with common isolates including Escherichia coli, Staphylococcus aureus, and Klebsiella pneumoniae.
- High resistance rates were observed for common antibiotics, and specific resistance genes (e.g., mecA, blaCTX-M-A, mcr-1) were frequently detected.
Conclusions:
- MDR bacterial carriage and resistance genes are frequently detected upon hospital admission in children with acute diarrhea.
- Findings suggest community or prior healthcare exposure rather than in-hospital selection.
- Urgent need for enhanced antimicrobial stewardship, infection control, and diagnostics to address this public health challenge.
Objectives:
This study aimed to assess the prevalence of multidrug-resistant (MDR) bacterial carriage and resistance-encoding genes in children with acute diarrhea.
Methods:
A prospective study was conducted from July 2020 to July 2021 in hospitalized children aged under 5 years. Stool samples were collected at hospital admission. MDR bacteria were identified by culture, antimicrobial susceptibility patterns were assessed using the disk diffusion method, and resistance genes were investigated in isolates, using real-time polymerase chain reaction. Colistin resistance genes were also tested from stool samples.
Results:
A total of 451 children were included; 33.2% harbored at least one MDR bacteria and/or one colistin resistance genes. A total of 79 (17.6%) children were positive for at least one MDR pathogen by culture. A total of 100 isolates were identified, including 17 methicillin-resistant Staphylococcus aureus and 83 Enterobacteriaceae. Escherichia coli was the most common (11.8%), followed by S. aureus (3.8%) and Klebsiella pneumoniae (2.7%). High resistance levels were observed in tested isolates: 94.8% to ceftriaxone, 77.1% to cefepime, 42.2% to piperacillin-tazobactam, and 19.3% to ertapenem. Among methicillin-resistant S. aureus isolates, 15 of 17 (88.2%) carried the mecA gene. Among Enterobacteriaceae, 73/83 (88.0%) carried blaCTX-M-A , 49 (59.0%) had blaTEM , 19 (22.9%) had blaSHV , and six (7.2%) were positive for blaNDM . In addition, 87 (19.3%) of 451 children carried at least one colistin resistance gene, with 10.9% of mcr-1.
Conclusions:
MDR bacterial carriage and resistance genes were frequently detected at hospital admission, reflecting community or previous health care-associated exposure rather than in-hospital antibiotic selection. These findings underscore the urgent need for strengthened antimicrobial stewardship, rational antibiotic use, improved infection control, and enhanced diagnostic capacity.
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