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Disentangling Superpositions: Interpretable Brain Encoding Model with Sparse Concept Atoms
1Biophysics Program, University of California, Berkeley, Berkeley, CA 94720.
Biorxiv : the Preprint Server for Biology
|February 9, 2026
Summary
We developed a Sparse Concept Encoding Model to interpret brain activity. This model enhances understanding of how the brain processes concepts from natural language, improving upon existing artificial neural network methods.
Area of Science:
- Neuroscience
- Cognitive Science
- Artificial Intelligence
Background:
- Encoding models using artificial neural network (ANN) features predict brain responses to stimuli.
- Interpreting these models is challenging due to feature superposition and entanglement in dense embeddings.
- This entanglement prevents clear identification of semantic features and voxel selectivity.
Purpose of the Study:
- To develop a novel encoding model for enhanced interpretability of brain responses.
- To address the limitation of feature entanglement in dense embeddings.
- To enable direct readout of conceptual selectivity from voxel weights.
Main Methods:
- Introduced the Sparse Concept Encoding Model (SCEM).
- Transformed dense embeddings into a higher-dimensional, sparse, non-negative space of learned concept atoms.
- Applied the SCEM to functional magnetic resonance imaging (fMRI) data from story listening.
Main Results:
- The SCEM achieved prediction performance comparable to conventional dense models.
- The model significantly enhanced the interpretability of neural representations.
- Enabled disentanglement of overlapping cortical representations (e.g., time, space, number).
Conclusions:
- The SCEM provides a scalable and interpretable bridge between ANN features and brain representations.
- Offers a framework for novel neuroscientific analyses of conceptual maps.
- Facilitates a deeper understanding of semantic feature encoding in the human brain.
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