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Published on: August 6, 2019
Flavobacterium oryzagri sp. nov. and Flavobacterium oryzicola sp. nov., isolated from paddy soil
Seunghwan Kim1, Daseul Lee1, Jun Heo1
1Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Republic of Korea.
Abstract:
Two bacterial strains, designated M3-11T and M6-14T, were isolated from paddy field soils in the Republic of Korea. Cells were aerobic, Gram-stain-negative, rod-shaped and non-flagellated but motile. The strains exhibited optimal growth at 28 °C and pH 7.0 and in the absence of NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains M3-11T and M6-14T were placed within the genus Flavobacterium, showing the highest similarity to Flavobacterium zhairuonense A5.7T (97.98%) and Flavobacterium nitrogenifigens NXU-44T (98.23 %), respectively. The genomic similarity between two strains and their closely related strains was 39.3 and 51.1 % for digital DNA-DNA hybridization and 90.0 and 93.2 % for orthologous average nucleotide identity, both of which were lower than the thresholds recommended for species delineation. The respiratory quinone was menaquinone-6, and the major polar lipids were phosphatidylethanolamine and aminolipid. The major fatty acids (>10 %) were iso-C15 : 0 and summed feature 3. The phenotypic, chemotaxonomic and genotypic data obtained in this study showed that strains M3-11T and M6-14T represent novel species of the genus Flavobacterium, for which the names Flavobacterium oryzagri sp. nov. (type strain M3-11T=KACC 22761T=JCM 35942T) and Flavobacterium oryzicola sp. nov. (type strain M6-14T=KACC 22763T=JCM 35943T) are proposed.
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