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Updated: Feb 11, 2026

Investigating Intestinal Barrier Breakdown in Living Organoids
Published on: March 26, 2020
Phytic acid (InsP6) activates HDAC3 epigenetic axis to maintain intestinal barrier function
Sujan Chatterjee1, Zachary Sin1, Nguyen Tran1
1Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, NV, USA.
Inositol polyphosphate multikinase (IPMK) and phytic acid (InsP6) activate the HDAC3 epigenetic axis, crucial for intestinal barrier integrity. This discovery offers potential therapeutic strategies for inflammatory bowel disease and leaky gut conditions.
Area of Science:
- Epigenetics
- Molecular Biology
- Gastroenterology
Background:
- Histone deacetylase (HDAC) inhibition is a promising cancer therapy but limited by gastrointestinal side effects.
- Understanding HDAC activation is key for broader therapeutic applications.
- The role of inositol polyphosphates in epigenetic regulation is an emerging area.
Purpose of the Study:
- To elucidate the mechanism by which inositol polyphosphate multikinase (IPMK) and inositol hexakisphosphate (InsP6) activate HDAC3.
- To investigate the role of the IPMK-HDAC3 pathway in maintaining intestinal barrier integrity.
- To explore the therapeutic potential of InsP6 in inflammatory conditions.
Main Methods:
- Biochemical assays to study IPMK-HDAC3 interaction and InsP6 synthesis.
- Cellular models of IPMK deletion and InsP6 treatment.
- Analysis of histone acetylation and matrix metalloproteinase (MMP) gene expression.
- In vivo studies using inflammatory bowel disease models.
Main Results:
- IPMK directly binds to HDAC3 and promotes InsP6 synthesis.
- InsP6 selectively activates HDAC3 at nanomolar concentrations by recruiting its corepressor.
- IPMK deletion compromises intestinal barrier integrity via histone hyperacetylation and MMP upregulation.
- InsP6 treatment rescues these defects.
- Diminished IPMK exacerbates intestinal permeability in IBD models; oral InsP6 mitigates 'leaky gut'.
Conclusions:
- The IPMK-HDAC3 pathway is essential for maintaining intestinal barrier function.
- InsP6 is a selective activator of HDAC3 and a potential therapeutic agent for gut barrier disorders.
- Dietary phytic acid (InsP6) may play a significant role in gut health through epigenetic mechanisms.
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