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Updated: Feb 12, 2026

Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER
Published on: June 23, 2012
Significant Correlation Between White Matter Hyperintensity Volume and Rare NOTCH3 Variants in the General Japanese
Ikuko Mizuta1, Fumio Yamashita2,3,4, Yoichi Sutoh3,4
1Department of Neurology, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Hereditary genes like NOTCH3 may influence white matter hyperintensities (WMH) volume in older Japanese adults. This study found a correlation between rare NOTCH3 variants and WMH volume, suggesting a genetic link to cerebral small vessel disease.
Area of Science:
- Neurology
- Genetics
- Radiology
Background:
- Cerebral small vessel disease (CSVD) is common in the elderly, with white matter hyperintensities (WMH) being a key MRI finding.
- Understanding the genetic underpinnings of CSVD is crucial for identifying at-risk populations and developing targeted interventions.
Purpose of the Study:
- To investigate the contribution of hereditary genes associated with CSVD to MRI findings in a general Japanese population.
- Specifically, to examine the relationship between variants in genes like NOTCH3 and ABCC6 and markers of CSVD, such as WMH and lacunes.
Main Methods:
- Analysis of MRI data and genetic variants from 324 individuals aged 50+ in the Tohoku Medical Megabank (TMM) cohort.
- Focus on variants in NOTCH3, ABCC6, COL4A1, COL4A2, GLA, HTRA1, and TREX1 genes, adjusting for factors like age, sex, hypertension, and diabetes.
- Gene-based association tests (burden test, SKAT) were employed to analyze the relationship between genetic variants and WMH/lacune volume.
Main Results:
- Pathogenic variants were found in the ABCC6 gene (n=20).
- A significant correlation was observed between white matter hyperintensity (WMH) volume and rare NOTCH3 variants using the sequence kernel association test (SKAT) (p=0.027 after full adjustment).
- No significant association was found between intracranial major artery stenosis/occlusion (ICASO) and the RNF213 p.Arg4810Lys variant.
Conclusions:
- The study suggests that NOTCH3 variants may play a role in determining white matter hyperintensity (WMH) volume within the general Japanese population.
- This finding highlights the potential genetic contribution to cerebral small vessel disease (CSVD) pathogenesis.
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