Related Experiment Video
Updated: Feb 13, 2026

Use of Viral Entry Assays and Molecular Docking Analysis for the Identification of Antiviral Candidates against Coxsackievirus A16
Published on: July 15, 2019
Synthesis and multidimensional investigation of a tetra-substituted imidazole derivative: Spectroscopy, DFT/NLO
R Madhu Babu1, Natrayan Lakshmaiya1
1Department of Research and Innovation, Saveetha School of Engineering, SIMATS, Chennai, Tamil Nadu, India.
Abstract:
A novel tetra-substituted imidazole derivative (BDIM) was synthesized via a one-pot, four-component condensation reaction using BF3 as a Lewis acid catalyst. The experimental FT-IR,1H- and 1³C-NMR spectra show a very good match with the DFT-calculated results, which proves that the optimized molecular geometry and electronic structure are correct. The strong correlation between the experimental and theoretical spectral parameters supports the proposed molecular structure and shows that the computational method used is reliable. NBO analysis revealed strong π→π* (13.26-22.43 kcal mol-1) and n→π* (23.93-35.85 kcal mol-1) interactions, indicating extensive π-conjugation and intramolecular charge transfer. Moderate n→σ* delocalization (∼7.7 kcal mol-1) further contributes to overall molecular stability. The frontier molecular orbital (FMO) calculations gave a HOMO-LUMO energy gap of 3.11 eV, and the compound displayed high nonlinear optical (NLO) activity with a first-order hyperpolarizability (β0) of 1.399 × 10-³0 esu, suggesting strong potential for optoelectronic applications. Molecular electrostatic potential (MEP) and Mulliken charge analyses highlighted reactive regions suitable for further functionalization. Molecular docking and molecular dynamics (MD) simulations were performed to evaluate the interaction of the synthesized imidazole derivative BDIM with key SARS-CoV-2 target proteins 6WCF, 6Y84, and 6LU7, compared with hydroxychloroquine and native ligands. Docking results showed that BDIM exhibited strong binding affinities of -9.7, -7.8, and -8.1 kcal/mol, respectively, surpassing hydroxychloroquine and comparable to the native ligands. The 6WCF-BDIM complex, showing the highest affinity, was further analyzed by MD simulations for 100 ns. The analysis revealed potential risks of neurotoxicity, respiratory toxicity, blood-brain barrier penetration, and GABA receptor interaction, while showing low probabilities for hepatotoxicity, nephrotoxicity, mutagenicity, and carcinogenicity.
More Related Videos
08:49Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
06:37Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
Published on: September 17, 2021
Related Concept Videos
Kinetic Molecular Theory and Gas Laws Explain Properties of Gas Molecules
IR Spectroscopy: Molecular Vibration Overview
Stretching vibrations are vibrational motions that occur along the bond line, changing the bond length or distance between two bonded atoms. They are further distinguished as symmetric or asymmetric. In symmetric stretching, the...
Molecular Spectroscopy: Absorption and Emission
Relation of DFT to z-Transform
To understand how the DFT works, it's helpful to consider the z-transform, which is a method for representing discrete sequences in the complex frequency domain. The z-transform involves summing the...
Spectroscopy of Carboxylic Acid Derivatives
NMR Spectroscopy of Benzene Derivatives