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Artificial intelligence-driven anticancer peptide discovery
Junrui Wu1, Shuaiqi Ji1, Kashif Iqbal Sahibzada2,3,4
1College of Food Science Shenyang Agricultural University, National Agricultural Environmental Microbial Germplasm Resource Bank, Liaoning Engineering Research Center of Food Fermentation Technology, Shenyang Key Laboratory of Microbial Fermentation Technology Innovation Shenyang PR China.
Abstract:
Cancer has become a major global health threat. Despite advances in modern medicine, current therapeutic strategies still face many limitations. Anticancer peptides (ACPs), due to their high selectivity, low toxicity, and multitarget effects, have gradually become a research focus in the development of novel peptide-based anticancer drugs. However, traditional screening methods are constrained by their low efficiency, high costs, and technical complexity, limiting their capacity to meet the demands of high-throughput applications. Artificial intelligence (AI) has provided new methods to address these challenges, significantly improving the efficiency and accuracy of ACP screening through the application of machine learning and deep learning algorithms. To further enhance the application of AI in ACP screening, the advantages and limitations of 68 AI models used for ACP screening are systematically summarized. AI models show considerable potential for discovering ACPs, but most of these models lack interpretability and wet-laboratory validation, which hinder the credibility and practical effectiveness of AI-based ACP screening. Therefore, we presented a comprehensive ACP screening framework based on AI models. The presented framework includes data collection and organization, feature extraction, model construction, model interpretability analysis, and experimental validation. Additionally, we integrated this screening framework with multi-omics and other biotechnologies to promote the translation of AI-selected ACPs to the clinic. The presented AI-based ACP screening framework can accelerate the ACP development, increase ACP screening efficiency, and promote clinical ACP application.
Insights
Artificial intelligence (AI) accelerates the discovery of anticancer peptides (ACPs) by overcoming traditional screening limitations. A new AI framework enhances ACP screening efficiency and clinical translation, addressing model interpretability and validation gaps.
Area of Science:
- Biotechnology
- Computational Biology
- Drug Discovery
Background:
- Cancer remains a significant global health challenge with limitations in current therapies.
- Anticancer peptides (ACPs) offer a promising avenue for novel drug development due to their selectivity and low toxicity.
- Traditional ACP screening methods are inefficient, costly, and complex, hindering high-throughput applications.
Purpose of the Study:
- To systematically review the advantages and limitations of 68 AI models for ACP screening.
- To propose a comprehensive AI-based framework for ACP screening to enhance efficiency and clinical translation.
- To integrate multi-omics and biotechnologies into the AI framework for improved ACP development.
Main Methods:
- Systematic review and summarization of 68 AI models for ACP screening.
- Development of a novel AI-based ACP screening framework encompassing data organization, feature extraction, model construction, interpretability analysis, and experimental validation.
- Integration of multi-omics and biotechnologies with the AI screening framework.
Main Results:
- AI models demonstrate significant potential in improving ACP screening efficiency and accuracy.
- Existing AI models for ACP screening often lack interpretability and experimental validation, impacting their practical utility.
- The proposed AI framework addresses these limitations by incorporating interpretability analysis and experimental validation.
Conclusions:
- The developed AI-based ACP screening framework accelerates the identification and development of novel anticancer peptides.
- This framework enhances screening efficiency and promotes the clinical application of AI-discovered ACPs.
- Integrating AI with multi-omics and biotechnologies is crucial for translating AI-selected ACPs into effective clinical therapies.
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