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Updated: Feb 13, 2026

High-Throughput Cellular Profiling of Targeted Protein Degradation Compounds Using HiBiT CRISPR Cell Lines
Published on: November 9, 2020
Reversible control of T cell exhaustion by NR4A transcription factors revealed through targeted protein degradation
Erik Ehinger1,2,3, Kristy C Perez1,2, Emi Sanchez1
1Center for Cancer Immunotherapy, La Jolla Institute for Immunology, La Jolla, CA, USA.
Abstract:
Tumor-infiltrating CD8+ T cells (TILs) show progressive loss of effector function and upregulation of inhibitory receptors. NR4A transcription factors have emerged as key regulators of this dysfunctional state. Here we developed degron-based systems enabling rapid degradation of endogenous NR4A proteins in both mouse and primary human T cells. We demonstrate that the continuous presence of each NR4A protein is required to maintain suppression of effector cytokines and expression of co-inhibitory receptors; degradation of individual NR4A proteins rapidly restored these functional features, with each NR4A protein exerting prominent effects on distinct as well as overlapping subsets of genes and surface markers associated with effector, memory and exhaustion programs. Transcriptional profiling of phenotypically defined populations revealed both shared and unique gene programs across NR4A family members. Through CRISPR-mediated endogenous gene editing in primary human CD8+ T cells, we show that targeted degradation of NR4A proteins with a small molecule degrader can maintain cytokine expression and suppress inhibitory receptor expression in cells subjected to chronic stimulation, providing a framework for a powerful strategy for therapeutic intervention.
Insights
Targeted degradation of NR4A proteins restores function in tumor-infiltrating CD8+ T cells (TILs). This approach maintains cytokine expression and reduces inhibitory receptors, offering a promising therapeutic strategy for cancer immunity.
Area of Science:
- Immunology
- Molecular Biology
- Cancer Research
Background:
- Tumor-infiltrating CD8+ T cells (TILs) often lose function and gain inhibitory receptors, contributing to immune evasion.
- NR4A transcription factors are identified as key regulators driving this T cell dysfunction and exhaustion.
Purpose of the Study:
- To investigate the role of NR4A transcription factors in T cell dysfunction.
- To develop a therapeutic strategy for restoring anti-tumor function by targeting NR4A proteins.
Main Methods:
- Development of degron-based systems for rapid degradation of endogenous NR4A proteins in mouse and human T cells.
- Transcriptional profiling of phenotypically defined T cell populations.
- CRISPR-mediated gene editing combined with small molecule degraders in primary human CD8+ T cells.
Main Results:
- Continuous presence of NR4A proteins is necessary for suppressing effector cytokines and maintaining co-inhibitory receptor expression.
- Degradation of individual NR4A proteins rapidly restored T cell effector functions, impacting distinct and overlapping gene subsets.
- Targeted NR4A degradation maintained cytokine expression and suppressed inhibitory receptors in chronically stimulated human T cells.
Conclusions:
- Individual NR4A family members contribute to T cell dysfunction through both shared and unique mechanisms.
- Targeted degradation of NR4A proteins represents a viable therapeutic strategy to restore anti-tumor T cell function.
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