Related Experiment Video
Updated: Feb 13, 2026

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
Published on: September 17, 2021
Automated Discovery of Reactive Events via Hypergraph Mining of Ab Initio Atomistic Simulations
Alexandra Stan-Bernhardt1, Paolo Pellizzoni2, Karsten Borgwardt2
1Ludwig-Maximilians-Universität München, Chair of Theoretical Chemistry, Department of Chemistry, Butenandtstr. 5, D-81377 München, Germany.
None:
The field of generative chemistry and automated exploration of chemical reaction space has gained much interest in recent years as it provides a feasible alternative to performing resource-intensive experiments by enabling important computational insights into new molecular systems. The results are often summarized in reaction networks, which reveal intricate relations between different key reactive events. Although various approaches to explore the available chemical space have been introduced, the information contained in the resulting reaction networks has not been fully exploited so far. We propose an automated workflow for the analysis of chemical reaction networks by applying frequent pattern mining on the corresponding directed hypergraphs to identify frequently occurring reactive patterns across a set of simulations. Furthermore, we identify reactive events that are statistically correlated with given environmental conditions by applying Fisher's exact test and controlling the family-wise error rate to ensure high statistical relevance. Minimum energy paths for frequent and statistically significant patterns are obtained with the molecular double-ended growing string method at ωB97X-3c level of theory. We showcase the pattern-mining-based analysis on the thermally controlled interstellar synthesis of carbamic acid, where we retrieve results in line with experimental data and further investigate the role of water as a protic solvent therein.
More Related Videos
10:27Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling
Published on: October 21, 2018
12:11Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Related Concept Videos
Drug Discovery: Overview
Integration of Synaptic Events
Cross-reactivity
Reactivity of Enols
Schwarzschild Radius and Event Horizon
The minimum speed required to launch a projectile from the surface of an object to which it is gravitationally bound so that it eventually escapes the object’s gravitational field is called the escape velocity. The escape velocity is independent of the mass of the object. Merging the idea of escape...
Reactivity of Enolate Ions