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Published on: May 1, 2015
Epigenome-Wide Association Studies of Proteasome Inhibitor-Related Cardiotoxicity in Patients with Multiple Myeloma
Raed Awadh Alshammari1,2, Samuel M Rubinstein3, Eric Farber-Eger4
1Department of Pharmacotherapy and Translational Research and Center for Pharmacogenomics and Precision Medicine, College of Pharmacy, University of Florida, Gainesville, FL 32610-0486, USA.
Abstract:
Background/Objectives: Carfilzomib (CFZ) and bortezomib (BTZ) are proteasome inhibitors used as the first-line therapy for relapsed or refractory multiple myeloma (MM) but are associated with cardiovascular adverse events (CVAEs). This study aims to identify differentially methylated positions (DMPs) and regions (DMRs), and enriched pathways associated with CVAEs related to CFZ or BTZ-based treatment. Methods: Baseline germline DNA methylation profiles from 79 MM patients (49 on CFZ and 30 on BTZ) in the Prospective Study of Cardiac Events During Proteasome Inhibitor Therapy (PROTECT) were analyzed. Epigenome-wide analyses were performed within each group, followed by meta-analyses to identify signals common to CVAEs associated with both medicines. Results: Four DMPs were significantly associated with CFZ-CVAEs, including cg15144237 within ENSG00000224400 (p = 9.45 × 10-10), cg00927646 within TBX3 (p = 9.78 × 10-8), and cg10965131 within WDR86 (p = 1.00 × 10-7). One DMR was identified in the FAM166B region (p = 5.46 × 10-7). There was no evidence of any DMPs in BTZ-treated patients, however two DMPs and one DMR reached a suggestive level of significance (p < 1.00 × 10-5): cg09666417 in DNAJC18 (p = 3.41 × 10-7) and cg12987761 in USP18 (p = 5.00 × 10-7), and a DMR mapped to the WDR86/WDR86-AS1 region (p = 8.11 × 10-8). Meta-analysis did not find any significant DMPs, with the top CpG being cg17933807 in GNL2 (p = 7.38 × 10-5). Pathway enrichment analyses identified peroxisome, MAPK, Rap1, adherens junction, phospholipase D, autophagy, and aldosterone-related pathways to be implicated in CVAEs. Conclusions: Our study identified distinct DMPs, DMRs, and pathways enrichment associated with CVAE, suggesting epigenetic contributors to CVAEs and supporting the need for larger validation studies.
Insights
This study identified distinct DNA methylation changes linked to cardiovascular adverse events (CVAEs) in multiple myeloma patients treated with carfilzomib or bortezomib, suggesting epigenetic factors contribute to these side effects.
Area of Science:
- Genomics and Epigenetics
- Oncology
- Cardiology
Background:
- Proteasome inhibitors like carfilzomib (CFZ) and bortezomib (BTZ) are first-line treatments for relapsed/refractory multiple myeloma (MM).
- These therapies are associated with significant cardiovascular adverse events (CVAEs).
- Understanding the molecular basis of CVAEs is crucial for patient safety.
Purpose of the Study:
- To identify differentially methylated positions (DMPs) and regions (DMRs) associated with CVAEs in MM patients undergoing CFZ or BTZ treatment.
- To explore enriched biological pathways implicated in treatment-related CVAEs.
- To investigate potential epigenetic contributors to CVAEs in proteasome inhibitor therapy.
Main Methods:
- Analysis of baseline germline DNA methylation profiles from 79 MM patients in the PROTECT study.
- Epigenome-wide association studies (EWAS) were conducted separately for CFZ and BTZ treatment groups.
- Meta-analysis was performed to identify common epigenetic signals associated with CVAEs across both drug treatments.
Main Results:
- Four significant DMPs were associated with CFZ-related CVAEs, including those near ENSG00000224400, TBX3, and WDR86.
- One significant DMR was identified in the FAM166B region for CFZ-CVAEs.
- Suggestive DMPs and a DMR were noted in BTZ-treated patients (DNAJC18, USP18, WDR86/WDR86-AS1), but meta-analysis revealed no significant common DMPs.
- Pathway analysis implicated peroxisome, MAPK, Rap1, adherens junction, phospholipase D, autophagy, and aldosterone signaling in CVAEs.
Conclusions:
- Distinct epigenetic signatures (DMPs and DMRs) are associated with CVAEs in patients treated with CFZ and, to a lesser extent, BTZ.
- Enriched pathways suggest diverse biological mechanisms underlying CVAEs.
- These findings highlight the role of epigenetics in CVAE development and underscore the need for larger validation studies.
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