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Bioinformatic Prediction of Activation States in Molecular Network Pathways of Eukaryotic Initiation Factor 2 (EIF2)
Shihori Tanabe1, Sabina Quader2, Ryuichi Ono3
1Division of Risk Assessment, Center for Biological Safety and Research, National Institute of Health Sciences, Kawasaki 210-9501, Japan.
Abstract:
Eukaryotic initiation factor 2 (EIF2) signaling plays a crucial role in regulating mRNA translation and initiating eukaryotic protein synthesis. Computational molecular network pathway analysis of the canonical pathways of the coronaviral infection revealed that EIF2 signaling is inactivated when the coronavirus pathogenesis pathway is activated and vice versa. Our computational analyses indicated that the coronavirus pathogenesis pathway and EIF2 signaling had inverse activation states. Computational investigation of upstream or downstream microRNA (miRNA) revealed that EIF2 signaling directly interacted with miRNAs, including let-7, miR-1292-3p (miRNAs with the seed CGCGCCC), miR-15, miR-34, miR-378, miR-493, miR-497, miR-7, miR-8, and MIRLET7. A total of 36 nodes, including 8 molecules (ATF4, BCL2, CCND1, DDIT3, EIF2A, EIF2AK3, EIF4E, and ERK1/2), 1 complex (the ribosomal 40s subunit), and 1 function (apoptosis) in the coronavirus pathogenesis pathway, overlapped with EIF2 signaling. Alterations in EIF2 signaling may play a role in the pathogenesis of coronavirus.
Insights
Eukaryotic initiation factor 2 (EIF2) signaling is inversely regulated with coronavirus pathogenesis. Computational analysis reveals EIF2 signaling interactions with miRNAs and pathway molecules, suggesting a role in viral disease.
Area of Science:
- Molecular Biology
- Virology
- Computational Biology
Background:
- Eukaryotic initiation factor 2 (EIF2) signaling is essential for protein synthesis.
- Coronaviruses can disrupt cellular processes, impacting host protein production.
Purpose of the Study:
- To computationally investigate the relationship between EIF2 signaling and coronavirus pathogenesis.
- To identify molecular players and microRNAs (miRNAs) involved in this interaction.
Main Methods:
- Computational molecular network pathway analysis.
- Analysis of canonical pathways in coronaviral infection.
- Investigation of upstream and downstream miRNA interactions.
Main Results:
- EIF2 signaling and coronavirus pathogenesis pathways exhibit inverse activation states.
- EIF2 signaling directly interacts with specific miRNAs (e.g., let-7, miR-15, miR-34).
- Significant overlap exists between coronavirus pathogenesis pathway nodes and EIF2 signaling, including molecules like ATF4 and ERK1/2.
Conclusions:
- Alterations in EIF2 signaling are implicated in the pathogenesis of coronavirus infection.
- The interplay between EIF2 signaling, miRNAs, and viral pathways warrants further investigation.
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